Pseudomonas marginalis: U0037_27310
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Entry
U0037_27310 CDS
T10241
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pmab Pseudomonas marginalis
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmab03000
]
U0037_27310
Transcription factors [BR:
pmab03000
]
Prokaryotic type
Helix-turn-helix
Other families
U0037_27310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_23
AAA_2
PAS_9
HTH_30
HTH_7
PAS
PAS_8
HTH_50
HTH_17
HTH_28
HTH_22
AAA
HVO_A0261_N
RWP-RK
Diguanyl_cycl_sensor
HTH_AraC
Enkurin
Mga
HTH_20
Motif
Other DBs
NCBI-ProteinID:
WQD71709
LinkDB
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Position
complement(5971535..5973442)
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AA seq
635 aa
AA seq
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MHNDHFSRHAQQVLTVAHGRDPSSDPSIARSWLRCLEDYHLDPAQTIAPTVLEHGRLLES
RERLQQVLHIAGSEMNSLHQQLSGAGHAVLLTDARGVILNCVTAPSERKIFERAGLWLGA
DWSEACEGTNGIGTCLVERQSLTIHRDEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSA
REAVSRQSQFHTMALVNLSAKMIESCYFLRHFEHHWLLRFHLQAESVGLFSEGLLAFDGN
GRICAVNQSALNLLGQLRGGLLGQPVEAFFECSLDQLLGRASANATASWPLRTRDGRPLF
AALRGQARSVPAPVARPAVVERPRLPGICLGDPALQRDFSKALRVFERDVPLLINGETGS
GKEAFAKAVHQASQRADKAFVALNCAAIPESLIESELFGYRGGSFTGARKEGMQGKLQQA
DGGTLFLDEIGDMPLALQTRLLRVLEDRLVVPLGGEPQAVNVRIISATHRNLLERVQDGS
FREDLYYRLNGLEVGLPALRERSDKSQLLDFLLAQEANGEAVALDPAARMALLAFAWPGN
VRQLRTVLRTLVALCDEGRVALEDLPAQIRQARPVAAAQARPAESPLEDAERLALLTALQ
QQRWHMTHTAEQLGVSRNTLYRKLRRHGIARHALS
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgcacaacgatcatttcagtcgccatgcccagcaggtgctcactgtggcgcatggccgc
gacccgtccagcgacccctccatcgcccgttcctggctgcgttgcctggaggattaccac
ctcgaccctgcgcaaaccattgcccccaccgtgcttgaacacggccgcctgctggaaagc
cgcgagcgtctgcaacaggtgctgcacatcgccggcagcgagatgaacagcctgcatcag
cagctctcgggcgcggggcacgccgtgctgctcacggatgcgcggggcgtgatcctcaac
tgtgtcactgcgccgtccgagcgtaagattttcgagcgcgccgggctgtggctgggggcg
gattggagcgaagcctgcgaaggcaccaatggcatcggcacctgcctggtggagcgccaa
tccctgaccatccatcgcgatgagcactttcgtggccggcataccgggctgacgtgttcg
gcgagcccggtgttcgatccccacggtgacctgctggccgtgctggatgtgtcttcggcg
cgcgaagccgtgtcgcgccagagccagtttcacaccatggcgttggtgaacctgtcggcg
aagatgatcgagagttgctacttcctgcgtcactttgaacaccactggttgctgcgtttt
catctgcaggcggagtcggtgggcctgttcagcgaagggctgctggcgtttgatggcaac
gggcgcatttgtgccgtcaaccagagcgcgctgaacctgttggggcagctgcgtggcggc
ttgttggggcagccggtggaggcgtttttcgaatgctccctggaccagttgctcggacgc
gccagtgccaatgccacggccagttggccgctgcgtacccgtgatggccggccgctgttc
gcggcgctgcggggccaggcgcgcagcgttcccgcgccggtcgcccggcctgccgtggtg
gagcggccgcgcctgcccggcatctgcctgggcgatccggcgctgcaacgggacttcagc
aaggcgctgcgggtattcgagcgcgatgtgccgttgctgatcaatggcgaaaccggctcc
ggtaaagaggccttcgccaaggcggtgcaccaggccagccagcgtgccgacaaggcattc
gtggcgctcaactgcgccgccatcccggaaagcctgatcgaaagcgaactgttcggctat
cgcggcggcagctttaccggtgcgcgcaaagagggcatgcaaggcaagttgcagcaggcc
gatggcggcaccctgttcctcgatgaaatcggcgatatgcccctggcgctgcaaacccgt
ctattaagggtgctggaggatcggctggtggtcccgctcggcggtgagccccaggctgtg
aacgtgcgaattatcagcgcaacccaccggaatttgctggagcgtgtgcaggacggcagc
ttccgcgaggacttgtattaccggctcaatggcctggaagtcgggttgcccgctttgcgc
gagcgcagtgataaatcccagttgctggacttcctgctggcgcaggaggccaatggcgaa
gcggtggcgctcgacccggcggcgcgtatggcgctgttggcatttgcctggccgggtaac
gtgcgccagttgcgcactgtgctgcgtacgctggtggcgctgtgtgatgaagggcgcgta
gcgcttgaggacttgcccgcgcagattcgccaggcccgcccggtggccgccgcgcaggcc
aggcccgcagagtcgccgctggaagacgcggagcgcctggcattgctcaccgctttgcag
caacagcgctggcacatgacgcacacggcggagcagttgggcgtcagccgcaacacgctg
tatagaaagctgcgcaggcacggtatcgcacgccacgccctcagctaa
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