Pseudomonas marginalis: U0037_30085
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Entry
U0037_30085 CDS
T10241
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
pmab Pseudomonas marginalis
Pathway
pmab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pmab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
U0037_30085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmab03400
]
U0037_30085
Enzymes [BR:
pmab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
U0037_30085
DNA repair and recombination proteins [BR:
pmab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
U0037_30085
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
CbiK
Motif
Other DBs
NCBI-ProteinID:
WQD72233
UniProt:
A0ACD4XSV8
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All DBs
Position
6545384..6546163
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AA seq
259 aa
AA seq
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MRIISVNVNGIQAAVERGLLSWLQAQNADVICLQDTRASAFELDDPAFQLDGYFLYACDA
EVPTQGGVALYSRLQPKAVISGLGFETADRYGRYLQADFDKVSIATLLLPSGQNGDEDLN
QKFKLMDDFARYLDKQRRKRREYIYCGSLYVAQQKLDIKNWRDSQQSPGFLAPERAWMDE
IVGNMGYVDALREVSREGDQYSWWPDNEQAEMLNLGWRFDYQLLTPGLRRFVRSARLPRQ
PRFSQHAPLIVDYDWTLTI
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcatcagtgtgaacgttaatggtattcaggctgcagtcgagcgtggtttgctc
agttggctgcaagcccagaatgccgacgtcatctgcctgcaggatacccgcgcctccgcc
tttgaactggacgacccagccttccaactggatggctacttcctttatgcctgcgatgcc
gaagtgcccacccaaggtggcgtggctttgtattcgcggttgcaacccaaggcggtcatc
agcggcctcggcttcgagacagccgaccgctacgggcgctacctgcaagccgatttcgat
aaggtcagcatcgcgaccttgctgctcccttcggggcagaacggcgatgaagacttgaac
cagaagttcaagctaatggacgatttcgcccgttacctggacaaacagcggcgcaaacgt
cgcgagtacatttattgtggctcgctgtacgtggcgcaacagaagctggatatcaagaac
tggcgcgacagccagcaatctccaggcttcctggcgccggaacgcgcctggatggacgag
attgtcggcaacatgggctatgtcgacgcactgcgcgaagtcagccgcgaaggcgaccag
tacagctggtggccggataacgaacaggctgagatgctcaacctgggctggcgtttcgac
taccagttgctgacccccggcctgcgccggttcgttcgcagcgcacgcctgccgcgccag
ccacgcttctcgcagcacgcgccgctgatcgtggactacgactggacattgaccatctga
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