Papilio machaon (common yellow swallowtail): 106709308
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Entry
106709308 CDS
T05138
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106709308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106709308
03041 Spliceosome [BR:
pmac03041
]
106709308
03009 Ribosome biogenesis [BR:
pmac03009
]
106709308
03016 Transfer RNA biogenesis [BR:
pmac03016
]
106709308
Enzymes [BR:
pmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106709308
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106709308
Spliceosome [BR:
pmac03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106709308
Complex C
U4/U6.U5 tri-SnRNP related factors
106709308
Ribosome biogenesis [BR:
pmac03009
]
Eukaryotic type
Pre-60S particles
Helicases
106709308
Transfer RNA biogenesis [BR:
pmac03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106709308
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
106709308
NCBI-ProteinID:
XP_014356573
LinkDB
All DBs
Position
Unknown
AA seq
1032 aa
AA seq
DB search
MEQVEDLFDCFEESAEDTAEIELPKGVLRESKEPKNSSNKRSHEQVEYADTTETKRPKQD
DDEEEDEADLLADLDLDVLKSRIVIHTLETSDGCTHEVAIPPGHEYVPLAPISAEPAKQY
SFILDPFQKEALLCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSN
QKYREFSEEFQDVGLITGDVTINSSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHY
MRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPL
QHYIFPAGGDGIHLVVDEKGQFKEDNFNTAMAVLSNAGDAGKGEQRSRRGGVMRGNNKAN
IFNIVKMVMERNFAPVIIFSFSKKDCEAYAMLMAKLDFNTIEEKKLVDEVFNNAMDILSE
EDRKLPQVEHVVPLLRRGIGIHHGGLLPILKETIEILFSLGLIKALFATETFAMGLNMPA
RTVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKITPAVSQNYST
GKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQASIPDLIDKVTEKQKQYD
KLSLDQEKSIAEYCGIRAQLDLLAAKFRGFITRPEYLKPFLQPGRLVKVKTEKHEYDWGI
IVNFKHNTAKGKKQKEENPLTAEQAIIVDILLHVKKWEPSDLDTKFPCPPGETGEVEVVP
VLHTLINQISSLRVYYPKDLRPPDNRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIDDPVF
KKCVENIKILEEKLYEHPLHKDENRTTLISAYEKKQEYLEELNSAKAELKKAKSILHMDE
LKKRKRVLRRLGYCTTSDVIHLKGRIACELSSADELLLTELIFNGVFNSLSAEQSASLVS
CFVCDENASQDSNTGEELRGVLRQLQEFARRIAKVSIDCNMQLDEDEYVAKFKCTLMDIV
LAWCKGATFLDICKMTDVFEGSIIRCIRRLEEVLRQLCQAAKSIGNTDLEEKFSSAITML
KRDIIFAASLYM
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagtcgaagatttatttgattgttttgaagaaagtgctgaagatacggctgaa
atcgaacttccaaaaggagtcttacgtgaatctaaagaacccaaaaattcaagtaataag
cgatcgcacgaacaagttgagtacgctgatactacagagactaaaagaccaaaacaagat
gatgatgaggaagaggacgaggcagatctcctcgctgacttagatttggatgttttaaaa
tctcgtattgttatacatactttagaaacaagcgatggttgtacacatgaggtggccata
ccaccaggtcacgagtatgttccattggcacccatctctgctgaacctgctaaacaatac
agttttatacttgatccctttcaaaaagaagcactgctgtgtatagacaacttacaatct
gttttagtgtcggcacacacatctgctgggaaaactgttgtagcagagtatgcaatagca
ctttcattgaagaataaacaaagagtgatatataccaccccaatcaaggcgttgtcaaat
caaaaatacagggagttttctgaagagtttcaagatgtaggattgatcactggagatgta
acaatcaattcatcagcttcatgtctgataatgaccacagagattttaagaaacatgctg
tatagaggatcagaaataatgagagaagttggatgggttgtgtttgacgaaattcattac
atgagagataaagaaagaggagttgtatgggaagaaacattaattctcttgccagataat
gtgcattatgtgttcctatccgccactatccccaatgcgcgtcagttcgcagagtgggta
tgcagattacactctcagccctgtcacgtagtgtacaccgagtatagacctactccgcta
cagcattacatattccctgctggtggtgatggaatacatcttgttgttgatgagaagggt
caatttaaagaagacaacttcaacacagcgatggcggtgctgagcaatgcaggtgacgcg
ggtaagggtgagcagcgaagtcggcgcggcggagtcatgcgaggcaataacaaggccaat
atattcaatatcgtcaaaatggtcatggaaagaaatttcgcacccgtcatcatattcagt
ttcagcaagaaagattgtgaggcttacgctatgttgatggccaaattggactttaataca
attgaggagaagaagttagtggacgaggtgttcaacaacgcgatggacatcctgtcggag
gaggaccgcaagctgccgcaggtggagcacgtggtgccgctgctgcgacgcggcatcggc
atccaccacggaggcctgctgcccatactcaaggagaccatagagatactcttcagtttg
ggacttataaaggcactgttcgccactgaaacatttgcgatgggccttaacatgcccgcc
aggactgtggtgttcaccaactgtcagaaattcgacggaaaggactttagattcataacc
tcaggtgagtacattcagatgtcaggtcgcgcggggcgacgaggtttggatgacaagggt
atcgtcatcctcatgatagaccagaagatcacgccagcggttagtcaaaactacagtaca
ggcaaagctgaccctattaactccgccttccatcttacttataatatggtacttaatttg
ttacgagtggaagaaataaatcctgaatatatgttagagaggagtttcttccagtttcaa
aatcaagcctccattccagatctcatagacaaggtgacagaaaagcagaagcagtatgac
aaattatctttagatcaggaaaagtctatagcggagtactgtgggatacgagcccagctc
gatctgctggctgccaagttccgagggttcatcacccgtccagagtacctcaaacctttc
ctgcagccaggcagactggtcaaggtgaaaacagaaaaacacgaatacgactggggtata
atagtgaatttcaaacataacacagccaaaggaaagaagcagaaggaggagaaccctctg
acagcggagcaggccatcattgtggatatacttctgcatgtcaagaaatgggagccctca
gatctggacaccaagttcccgtgtccgccaggcgagactggtgaagtggaagtagtacca
gttttacatacacttataaatcaaataagttcccttcgagtttactatcctaaagattta
agaccacccgataaccgcaagtcagttctcaagacaataggcgaggtgaaaaaacgtttc
cccgaaggacctccattactgaatcctataaaagatatgaaaattgatgacccagtattc
aagaagtgtgtggaaaatattaaaatattggaagaaaaactttatgaacatcctttacac
aaagatgaaaatcgaaccacgttgatctcagcttacgaaaagaaacaagagtatttagaa
gaattaaactcagcgaaggcggagctgaagaaagctaagagtatactgcacatggatgag
ctgaagaaaaggaaacgagtccttagaagactgggatattgcaccacatctgatgttata
catttaaaaggtcggattgcctgtgaactaagtagtgcggatgagttgttgctgactgag
ttgatcttcaacggggtgttcaactcgttgtcagctgagcagagtgcatctctggtgtca
tgttttgtgtgtgatgagaacgcctcccaggactccaacaccggcgaggagctgcgcgga
gttctgcgccagctgcaggagttcgcgcggcgcattgccaaggtgtcgatagattgcaac
atgcagctggacgaggacgagtacgtggccaagttcaagtgcaccctcatggacatcgtg
ctcgcctggtgcaagggggccaccttcttagatatatgcaagatgactgatgtctttgaa
ggatcaataataagatgcatccgtcgcttggaagaggtgttacgtcagctgtgtcaggcc
gccaagagcattggtaacactgaccttgaagagaagttctcttcagccatcacgatgctc
aagcgagacattatatttgcagccagtttgtacatgtaa
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