Papilio machaon (common yellow swallowtail): 106712018
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Entry
106712018 CDS
T05138
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106712018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106712018
Enzymes [BR:
pmac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106712018
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106712018
mRNA degradation factors
3'-5' decay
Pan complex
106712018
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
UCH
WD40_CDC20-Fz
PEP5_VPS11_N
zf-CCCH_2
Beta-prop_WDR36-Utp21_1st
WD40_Prp19
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
106712018
NCBI-ProteinID:
XP_014359944
LinkDB
All DBs
Position
Unknown
AA seq
967 aa
AA seq
DB search
MEYHYSDHCLQSEHLLTEEYASDYSQQFLVPTKEGEYEVRSSVLVDGGDRFGVSAVVFDK
HEELIWMGNQGGHVTSYYGPSMQKYTSFQIHDSEEVRDIVTDEIGIYALTKTTLRHQIRR
GIPKHTYRSTNMTDMQCLLQVNPTKLMMGGHQNKLLEFDVTKMTETVIPIKEDGCVVMRS
GGATLLACGSANGQVSLRDLRTPNAAEHTFRAHANSLSDMDMQGDLLISCGFTQSAGGVA
VAEPYVVVWDLRCLKGTSTVDRARSIHTAAAPLLLHFLPAFSGRAVALSGDGHVALLHVN
APQEKQSVFQVDTQSSMSVTDVSATSQALVFGDQGGHLHLFSPRQNNEPVFNNFSRETEF
ADQLPTLPTASLKDKNFKFSSVKLPELTNGKWCNELPPEFFKKAYRKPKPIDPELLSTMK
MKGPIGYAPNPKTTRRNQMPYISDTLEDLSVVKQYENKCSTLPIPEHYQKLDLHYNKHGS
NEELENYNKTKLPGLEATIPNSYCNPMLQVSGFLFRMLDTSNGVACQANNFLRAFRTVPE
AAALGLILTDTTDPRPDLLALIQSWNRFILHQIHSEILETRKKEKELAKLSKTSPPKGRV
NTKMQAVLNGPYKEAFQYTKLEFVADFDDDEKEMDSAKITKEVKNGIEQIKLGEQTFPNN
RSVEREESEISQLFAIGRHQLNRCLKCNKEEERESVTLACLLQYGEAQPVGAGGSGGGAG
GVGAVGAGGGFAELVQASLSARRSTPAWCDTCSRFTPTAQRGRLTRLPPILAINCGGVTP
HEKAYWSKGVTKEVDASKKVSTGKPCRYGVHCARAGCRFKHPDKPTSSQSGSAKSPQESN
CVLPHHLVIRQQSDGDVAINDKKDLSTEINRLDVNKQKKKYKTRSEEEYTLSAAVVCVED
NPKNLVAYIQVNKDNEPKWYLFNDLSIVPVSADEVVEYSAWWKSPCVLFYTAARARYRPP
TDTNHTP
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atggaatatcattattcggatcattgtttgcaatccgaacatctgttgactgaggaatac
gcaagtgattattcgcaacaattcctcgtaccaacaaaggaaggggaatatgaggtgcgg
agtagtgttttggtggacggcggggatagatttggagtgtctgctgtggtgtttgataaa
catgaagaattgatatggatgggaaaccaaggtggtcatgttacatcatattatggtccc
agtatgcagaaatatacatcttttcaaattcacgattcagaagaagttagggacatagta
acagatgaaataggtatttatgcattgacgaaaacaactctccgtcatcaaatacgtaga
ggaataccgaaacatacgtacagatcaacaaatatgaccgatatgcaatgtttgttacaa
gtcaatccaacaaaacttatgatgggaggtcatcaaaataaattattggagtttgatgta
acaaaaatgacagaaactgttatacctataaaagaagatggttgtgtagtgatgcgtagt
ggtggtgctactcttttggcgtgtggcagcgcaaacgggcaagtgtcacttcgtgatctc
aggactccgaatgcagccgaacacactttcagagctcatgctaattctttgtctgatatg
gatatgcaaggagacctgcttatatcatgtggattcacacaatcagccgggggtgtggca
gtagctgagccttacgtagtagtatgggacttacgttgcctcaagggtacatctacagtt
gaccgagcaaggtccatacatacagctgctgcaccactgttgctacatttcctgcctgcc
ttctctggccgtgcggtggcactgtcaggggatggacatgtcgcgttgctgcatgttaat
gccccgcaggagaagcagtctgtcttccaggtggacactcaaagctctatgagtgtaacg
gatgtgtcagcaacgagccaggctttagtgtttggtgatcaaggaggtcatctgcatctg
ttctcaccgcgacaaaacaacgaaccagtcttcaataacttctctagagaaacggagttc
gcagatcaattaccaactttgccaacggctagtttgaaagacaagaacttcaagttttcg
tctgtcaaattaccagaactgacgaatggtaaatggtgtaacgaattaccaccggaattt
tttaaaaaagcttacagaaaaccgaaaccgattgatcccgaattactttctacaatgaag
atgaaaggacccattggttatgctccaaatccgaagacaacgagaaggaatcagatgcct
tatatatcagatactttggaagatttaagtgttgttaaacaatatgaaaataaatgcagc
acattgcctattcctgaacattatcagaagttggatctccattataataaacatggatcg
aacgaggaattggaaaattacaataaaactaaactacctggtttggaggctacaatacct
aattcatattgtaatccaatgctgcaggtatcaggcttcctattccgcatgttagacacg
tctaatggcgtggcatgtcaggcaaacaactttctgcgtgcgttccgtactgtgcccgag
gcggctgcacttggtctaatactcactgacactactgaccccagacctgatttactggca
cttattcagagttggaaccgttttatcttgcatcaaatacattcagaaatattagagacg
cgtaagaaagaaaaggaattagccaaactcagtaaaactagtccgcctaaaggtcgtgta
aataccaagatgcaagctgtattaaacggaccttataaagaggcattccaatatactaaa
ttagagtttgttgccgactttgatgatgatgaaaaagaaatggactcagcaaaaataaca
aaggaagttaaaaacggaattgaacaaataaaactcggtgagcagacattcccaaacaat
cgttctgtggaacgcgaggagtctgagatctcgcagttgttcgcgatcggtagacatcag
ctaaatagatgtttaaaatgcaacaaagaggaggagcgcgagtcggtgacactggcgtgc
ctgctacaatacggcgaggcccagccggtgggcgcagggggttcggggggtggagcgggt
ggtgtgggtgcggtgggtgcgggcggggggttcgcggagctggtgcaggcgtcgctgtcg
gcgcggcgcagcacgcccgcctggtgcgatacctgctcacggttcactcctactgcacag
cgcggacgactcaccaggttaccaccaatattggcaatcaactgtggcggagtgacgcct
catgagaaagcttattggtcaaaaggagtaacaaaggaggtggacgcttctaagaaagtc
agcaccggcaagccgtgtcgttacggagtgcactgcgcacgcgccggatgtcgctttaaa
catccggacaaaccgacatcatctcaaagtggatcagccaagagtccgcaggaatctaat
tgtgtgttgccacaccatcttgtgatcagacaacaatcggatggcgatgttgccattaat
gataagaaggatttaagcacggaaataaaccgtctagacgtaaacaagcagaagaagaaa
tacaagactcggtcagaagaagaatatactctgtccgcggcggttgtgtgcgtggaagac
aaccctaagaatttagtcgcgtacatacaagtcaacaaggataatgaacctaaatggtat
ctttttaacgacttaagcatcgttcctgtgagcgcggacgaggtggttgaatacagcgcg
tggtggaaatccccctgtgtattgttctatacagccgcacgcgcacgataccgccccccc
actgacactaaccacaccccctaa
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