KEGG   Papilio machaon (common yellow swallowtail): 106712041
Entry
106712041         CDS       T05138                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
pmac  Papilio machaon (common yellow swallowtail)
Pathway
pmac03030  DNA replication
pmac03410  Base excision repair
pmac03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pmac00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    106712041
   03410 Base excision repair
    106712041
   03420 Nucleotide excision repair
    106712041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pmac03032]
    106712041
   03400 DNA repair and recombination proteins [BR:pmac03400]
    106712041
Enzymes [BR:pmac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     106712041
DNA replication proteins [BR:pmac03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    106712041
DNA repair and recombination proteins [BR:pmac03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      106712041
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf-DPOE zf_DPOE_2 DNA_pol_B DNA_pol_B_exo2 RNase_H_2 CAP-like_CFAP184
Other DBs
NCBI-GeneID: 106712041
NCBI-ProteinID: XP_014359971
LinkDB
Position
Unknown
AA seq 2134 aa
MVLQNTGKFRAEKSDNKKDAGSSSLSREESSESRIRIAVDNDRIDSKYGFERVRDTKERT
GYLINMHTAEILDEDKRLVAAMDYYFIEMDGSRFKVSLMFQPYFLISSRKECEQEVIQYL
SKKYAGTIHKIDIVEKEDLDLLNHLSGLKQRYIKLSFMSQNELMKVRREILTAVNKNKER
EKKDAIYSEMLTNALTSAAAIEHAKKTTDHMENIIDIREHDVPYHVRVSIDLKIFCGTWY
TVKSRGTEIPIFTKRDDIIERPDPIVLAFDIETTKLPLKFPDSQTDQIMMISYMIDGQGY
LITNREIISTDVEDFEYTPKPEFEGQFIVFNEVNELALIQKFFDHIMDVKPHIFVTYNGD
FFDWPFVEARAATLGLDMKQEIGFSKISARDGTYGCRPAMHMDCLCWVKRDSYLPVGSQG
LKAVAKAKLRYDPVELDPEDMCRMAAEQPQVLSNYSVSDAVATYYLYMKYVHPFIFALCT
IIKFTKXYVLRKGSGTLCESLLMVEAFHANIVFPNKQVEELNKLTADGHVLESETYVGGH
VEALESGVFRADIKCKFRIVPSAVDKLIETTEKTMKHAIEVEEGIPLELVTNFDEVCAEI
KAKLQHMKDHPRRDENPLIYHLDVGAMYPNIILTNRLQPSAMVNSSICAVCDYNRPDAVC
QRHMDWMWRGEYLPATRSEYQRIQQQLETEKFPPLHPGGPTRAFHVLPKEDQAAYEKKRL
ADYCKVAYKKTKVTRTEVRTTTVCQKENSLMQLYVDTVXSXRDRRYEYKALNKQAKAMVS
AAIKSGDAADIKSAKSREVLYDSLQLAHKCILNSFYGYVMRRGARWHSMEMAGIVCYTGA
NIIMRAREIIEQVGRPLELDTDGIWCVLPASFPENVTITSTHEKKKKINVSYPNAVLNAM
VKDHFTNDQYFELKDAETKTYEQRAENSIFFEVDGPYLAMVLPASKEEGKKLKKRYAVFN
FDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGNDLKSCYSAVAKVADYWLDVLYSK
GSNMPDSELFELISENRSMSKKLEDYGFHIIQDIXPRSSAGDILYIFLLISIEFDHRFII
SRKPEGAPVTERAVPLAIFQSPAGVRRHHLRRWLKDPGVSDDVDIRDVLDWAYYIERLSG
AIQKIITIPAAMQGLDNPVPRVQYPDWLHKKMLAKTDKFKTRKITDMFSAKPKDVQQNQD
DDAGGSHVDDSGNTEMDIEDIGKASTNKSPIRPIVHKVKRKREESPTKEFATWREALGPP
PPFGDTKEERIAWIVFQKKKWKWQMEQRGLANRNKRGKMDKSPAIPKSTGPVNTLGGFLK
RAQRTLLNTPWQIIQFKELMGELSAPEIEGIYETQMSLEFRVLVQLGCICAVDPQEARKM
IQSGSNIMDTFTLSQLQFKSVAHQPYLPKQDGVSPVKHIFLYQHSALNSSRSMWALILGP
IKKAYIFVLDTVKTNQLPNMNTLFAAERTAKHVVESEGRAVWRGVGRALQRYRDERCGAT
LLALQTALSPAALLTLVPGLSEFPLVPLHVRDVETLYSTLEWQRIGARAIVRHYLNLDSV
LNMTVEQCRYFHVPVGNMPSDPTLFGADLFYARHLIKNNFVLWCSNLERPDLGGREIDDN
RLVSEVEEMSGCTHNASGAYGVCVELESDALSVCALLQAQHVLHAEGTSAATSFGAQHNT
IQDAIASTTGASATTNYDEAAQCGAAFKILRTMIASWLRDVTLYKNVFADYQISHFYRWL
KTPTSLLYDPALRRTLYNLMKKLFLMLVAEFKRLGSAIVYADFNKILLYTKKNNVMDGIG
YVEFVVQSIRNKELFHGIDIRYKQCWSYLMWLDEANHAGIQGKLPAGLVEVGSSQVPAPS
ESNSQDEGEVTMQWNLAEFLPHAVREQFTAAVAGFLSAAYSNPDKLPALVAGEISQKLFR
VTEKINTRMPGLRPGDISPQPGLRADAFTEDSTPALLFVNAVCKVLSLDASIEDQVTLLR
RNLLRLIGVGEFGSAAQWREPCTSCVLPELICNVCNACRDLDLCRDTHRDIVNDMPVCLC
PTCGTPYDNQELEWRLIEVMNRRAMTFTLQDLVCTRCHQVKRENLAVVCDCAGDFALMVP
QKEIQTQLVTFKTIAEFYKMPLLLELIEFNLSNM
NT seq 6405 nt   +upstreamnt  +downstreamnt
atggttttgcaaaatacaggaaaatttagagcagagaaaagtgataacaaaaaagatgct
ggttcctcctcacttagcagagaagaatcttcagagtccagaattcgtatcgctgtcgat
aatgacagaattgattctaaatatggattcgaaagagtacgtgatacaaaagaacgcact
ggctacctcattaacatgcatactgctgaaatattggatgaagataaaagactggttgca
gcaatggactattattttattgaaatggatggttctcggttcaaagtgtcccttatgttt
caaccttacttccttatatcatcaagaaaagaatgtgaacaggaggtcattcagtatttg
tcaaagaaatatgcaggaactatacacaaaatagacattgttgagaaggaggatttggat
ttgcttaatcacttgtcgggactaaagcagcgttacattaagctctcatttatgtcccaa
aatgaattaatgaaagtgagaagagagatactgactgctgtaaataaaaataaagagaga
gaaaagaaagacgcaatttattctgaaatgttaactaatgctctgaccagtgctgccgct
attgagcatgcaaagaaaacaacagatcatatggagaatattattgatatcagagaacat
gatgtaccatatcacgtaagagtttcgatagacttgaaaatattttgcggcacttggtac
acggtaaagagtcgtggcactgaaataccgatatttacgaagagagatgatataattgaa
cggccggatcctattgttctggcttttgatattgagactacaaagttaccactaaagttc
ccggactcacagacggatcaaatcatgatgatatcgtacatgattgatggacaaggatat
ttgatcactaatagagagattatttctactgatgttgaagattttgaatatactcctaag
ccagagtttgaaggtcaattcatagtgtttaatgaggttaatgaattggccctgattcaa
aagtttttcgaccacatcatggatgttaagccgcacatttttgtaacatacaatggtgat
ttcttcgactggcctttcgtggaagcgcgcgcggccactttaggcctggacatgaaacaa
gagattggcttcagcaagatctccgctagagatgggacgtatggttgcagaccggccatg
catatggactgtttgtgttgggtgaaacgagactcatatttgccagttggttctcaagga
ctgaaggcggttgcgaaggccaagttgcgttacgaccccgtggagctcgaccctgaggat
atgtgcagaatggcagcggaacaaccacaggtgttatccaactattcagtatcagatgca
gtagctacatactacctttatatgaaatatgttcatccgtttatctttgctctctgcacc
atcattaaattcacaaaatagtacgtactgcggaaaggttccgggacgttatgcgagtct
ttattaatggtggaagcattccatgcaaatatcgtattccctaacaaacaagtggaggaa
ctaaataagctgactgcagacggacatgtgctggaatcagaaacgtatgtcggtggacat
gttgaggcactggaatcaggtgtattccgtgctgatatcaaatgcaagttccgtatagta
ccatcagctgtggacaaactcatagagacaacagagaagactatgaaacacgctatagag
gtagaagaaggtataccattggagctggtcaccaactttgatgaggtgtgcgcagaaatc
aaagccaaattacagcacatgaaagatcatccccggagagatgagaatccattaatatac
catttggatgtcggcgctatgtatcccaatattatattgactaacagattgcagccatcg
gcaatggttaactccagtatttgtgcggtgtgcgactacaaccgaccggatgccgtctgc
cagaggcatatggattggatgtggcgcggagaatacttgccagcaacaagaagtgaatac
caacgtatccagcagcaattggagacggagaagttccctccactgcatcctggtggtccg
accagagcctttcacgttctacctaaagaagaccaggctgcatatgaaaagaagcgtctg
gcagattattgtaaggtggcgtataaaaaaaccaaagttacacgaacagaagtcagaact
acaactgtctgtcagaaggagaattccttgatgcagctgtatgttgacacggtttaaagt
taaagggaccgtcgttacgaatacaaggcgttaaacaaacaagccaaagcgatggtgtca
gcggccataaagagtggcgatgcggctgacatcaagagtgccaagagtcgcgaagtgtta
tacgactcactgcagctcgcgcacaaatgtatcctcaattccttctacggatatgtcatg
agacgcggagctcgctggcacagtatggagatggcggggatcgtttgctatacaggtgca
aatataataatgcgagctcgtgagatcatcgaacaagttggacgtccgctagagttggat
actgacggtatttggtgtgtactgccagcctcgtttccagaaaatgtaactataacgagc
actcatgagaagaagaagaaaatcaacgtgtcctatcctaacgcagtactaaatgctatg
gtcaaggatcattttacaaatgaccaatactttgaattgaaagatgcggagacaaaaacc
tatgaacaacgagcagaaaactctatattctttgaagtggacggaccctacctcgctatg
gtattgcccgcctctaaagaggagggcaaaaagttgaagaagagatacgctgtgtttaac
tttgatggttcacttgctgaactgaaaggttttgaagtaaaacgtcgcggtgaattgcaa
ttgataaaaatctttcaatcatcagtatttgaagcatttttaaagggaaatgacttaaag
tcttgttatagtgcagtcgcgaaagtggctgattattggctagatgtgttgtacagtaag
ggctcgaatatgcccgattcggaactgtttgaattgatatcagaaaatagatcaatgtct
aagaagttagaagactacggatttcacattatacaggatatctagcctagatcatcggct
ggcgatatattatatatatttcttctcatttccattgaattcgaccatagatttataata
tcgcgcaagccagagggtgctccggtgacagagcgcgcggtaccgctggccatcttccaa
tctccggcgggtgtacgtcgacatcacctgcgacgttggctgaaagaccctggtgtctct
gatgatgttgatatacgagatgtactcgactgggcatactacatagaaagactcagcggt
gctatacagaagattatcaccataccagccgctatgcaagggttggacaacccagtacca
agagttcagtatcctgactggctgcataagaaaatgcttgccaaaactgataaattcaaa
accaggaagatcacggatatgttcagtgctaagcctaaagatgtgcagcagaaccaagat
gatgatgcgggagggagtcacgttgatgattctggtaatacagaaatggatattgaagat
atcggcaaagcgtctacaaataaaagtcctatacgaccaatagttcataaagtgaagagg
aaacgtgaagaatcgcctactaaagaattcgccacgtggagggaagctttgggaccccct
ccgccatttggtgatacaaaagaagaacgcattgcatggattgtttttcaaaagaagaaa
tggaaatggcaaatggaacaaagaggtttagcgaatagaaataaacgaggtaaaatggac
aaatcaccagctatacctaaaagtacaggccctgttaacacattgggtgggtttttgaag
agagcccaacgtacattactaaacacaccctggcagattatacagtttaaggaattaatg
ggagagttatccgctccagagatcgaaggtatttacgagactcagatgagtcttgagttc
agagtgttagtgcaacttggctgtatctgtgcagtcgatccacaggaggcgagaaagatg
attcaaagtggttcaaacattatggatacgttcactttgagccaacttcaattcaagagt
gttgcacatcagccatatttaccaaaacaagatggcgtatctcctgtgaaacatatattc
ctgtatcaacattcagctttaaactcaagtagaagtatgtgggcgttaatacttggccct
attaaaaaagcttacatatttgtacttgatacagtaaagacgaatcaactacctaatatg
aatacattgtttgctgcggaacgtacagctaaacatgtggtggagagtgagggtcgtgcg
gtgtggcggggagtggggcgcgcactgcagcggtaccgggacgagcgctgcggagccacg
ctgctcgcgctgcagactgcgctctcgcctgcagcactgctcacactggtcccaggtctg
tcagagtttcctttggtgccgctgcatgtgcgcgatgtggagacgttgtacagtacactg
gagtggcagcgtatcggcgcacgcgcaatcgtccgacactacctcaatctggattccgtc
ttgaatatgaccgttgaacaatgcagatatttccacgtacctgttggcaatatgccatca
gacccgacactgttcggagcagacttgttctacgcaagacatctcatcaagaacaacttt
gtactctggtgctctaatttggagagaccagatctgggcggcagagagattgatgataat
aggttagtaagtgaagtggaggagatgtctggatgtacgcacaacgcgagcggggcgtac
ggagtctgcgtggagttggagagtgatgctctgagcgtgtgcgcgttgctacaagcacag
catgtactgcatgctgaaggtaccagcgccgccacgtcatttggtgcccaacacaatact
atacaagatgcgatagcttccactacaggtgcgagtgcgacgacgaattacgacgaggcg
gcgcaatgcggtgctgcatttaaaatcctgcgcacaatgatcgcgtcctggttgcgtgac
gtcacactatacaagaacgtcttcgctgattatcagatatcgcacttttatagatggttg
aagacaccaacgtctttactttacgatcctgcgctgcgtcgcactttgtacaacctgatg
aagaagctcttcctcatgctggtggcggagttcaagcggctcggctcagccatcgtgtat
gctgacttcaataagatactactctatactaagaagaataatgtcatggatggtatcgga
tatgtggagttcgtggtgcagagcatcaggaacaaggagttgttccacggcatcgacatc
cgctacaagcagtgctggtcctacctgatgtggctggatgaagccaaccacgccggcata
cagggaaagttgccagcgggtttagtggaagttggctcatcacaagtaccggcaccaagt
gagagtaattcacaagatgagggcgaggtgacgatgcagtggaacttagcggagttccta
ccacatgcggtacgggaacagttcacagcggcagtggcgggcttcctcagcgccgcgtac
tccaacccggataaacttcccgccttagtagctggagagatctcacagaaattgtttcgt
gtgacagagaagataaacacacgtatgccaggtcttcgccctggtgatatctcgccgcag
ccaggactgcgagctgacgccttcactgaagactctacaccagctctgctgttcgttaat
gctgtctgcaaagtgctatcacttgatgcttccattgaggatcaggtgacattattacgt
cgtaacttgcttcgtctgatcggtgttggtgaatttggtagtgcggcgcagtggcgtgag
ccttgcacctcatgcgtactgcctgaacttatctgcaacgtgtgcaatgcctgcagagac
ctcgacctctgtcgggacactcacagagacattgttaatgatatgccagtatgtctctgt
cccacttgtggaactccttacgataaccaggagttggaatggagacttatcgaagtcatg
aacaggagagcaatgactttcacactacaagaccttgtttgtaccaggtgccatcaggtg
aaaagagaaaatctagctgttgtttgcgactgcgcaggtgattttgcactcatggtcccg
cagaaagaaatccagacacaactcgttacattcaaaaccattgctgaattctacaagatg
ccattattattagaacttattgaattcaatttaagtaacatgtga

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