Papilio machaon (common yellow swallowtail): 106713728
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Entry
106713728 CDS
T05138
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106713728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106713728
03041 Spliceosome [BR:
pmac03041
]
106713728
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106713728
Spliceosome [BR:
pmac03041
]
Complex B
Other components
Prp19-related factors
106713728
Complex C
106713728
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21_C
NRDE-2
Mad3_BUB1_I
TPR_10
ARM_TT21
DHR-2_Lobe_A
PPR
TPR_IF140_C
DUF908
Motif
Other DBs
NCBI-GeneID:
106713728
NCBI-ProteinID:
XP_014362060
UniProt:
A0A194R8T7
LinkDB
All DBs
Position
Unknown
AA seq
843 aa
AA seq
DB search
MPLLDGKEIDIFFSEEDLPYEEEILRNPYSVKHWLRYIEHKKDAPKHEINMIYERALKEL
PGSFKLWYNYLKIRRSQIRGRCITDPCFEDVNNCFERSLVFMHKMPRIWMDYCTFLTEQC
KITTTRKAFDCALRALPITQHHRIWPLYLIFLKKHHIPETAVRVFRRYLKLCPEDTEEYI
DYLISINKLDEAAVKLAHIVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKPNPTEDDDVDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIEDARLIFEKATQ
VPYAKVDDLASVWCEWAEMEIKHENYEEALKLMQKATVLPSRKVAYHDDNETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKAIFLLYAKLE
EEHGLARHAMAVYERATTAVLPEEMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPEER
AREMCIRFAEMETRLGEIDRARAIYSHCSQMCDPRITSEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGIKDGMRMLEAKAAEMAVQSKG
GNILFVRGETQGLKESGDKVLNPDEIDIDEEDSENSGDEEVAPVQKKEIPAAVFGGLAPG
KDQ
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgcctttgctcgacggaaaagaaattgatatattttttagtgaagaagacttaccatat
gaagaggaaatattaagaaatccttactcggtcaaacactggttaagatatattgaacat
aaaaaggatgcacccaaacatgaaataaacatgatttatgaaagagctctaaaggagctt
ccaggatcatttaagttatggtataattatctgaaaataagaagatctcaaattaggggt
cgctgtatcacagacccttgttttgaagatgtaaacaactgctttgaacgctctttagta
tttatgcataaaatgccaagaatatggatggattattgtacatttttaactgaacaatgt
aagataacaactactagaaaagcatttgattgtgctttgagagctcttcccattacacaa
catcacagaatatggccattatacctaatatttttgaaaaaacatcacattccagaaaca
gcagtcagagtatttagaagatatttgaaactatgtccagaagatactgaggagtatata
gattatcttatttcaataaataaattagatgaagcagctgtaaagttagcccatattgtt
aacaatgaaaattttcagtcaaaacatggaaagtccaatcatcagttatggaatgaactc
tgtgaacttatttctaaaaaccctgataaaattcattcactaaacgtagatgcaataata
agaggtgggttgagaagatacacagatcaattgggtcatttatggaactctcttgctgat
tattatgtaagaagtggtctttttgagagggctagagacatttatgaagaagccatacag
actgttaccactgtgagggatttcacccaagtttttgatgcatatgcacaatttgaagaa
cttagtttaagtaaaaagatggaagaagtagccaagaagccaaatccaacagaggatgat
gatgttgatttagaattaagattagcaaggtttgaatatttgatggagagaagactttta
ctgcttaattctgttcttcttagacaaaatccacacaatgtggctgaatggcataagaga
gtaaaattgtatgaaggaaaacctcatgaaattattgacacttatacagaagctgtccaa
acagttgatccaaaattagcagtaggaaaactatatacattatgggtgggttttgctaaa
ttttatgagagcaatgatcaaatagaagatgcaagattgatttttgaaaaagcaacccaa
gtcccttatgcaaaagtagatgatttagcatctgtatggtgtgaatgggcagaaatggaa
ataaaacatgaaaattatgaggaagcactgaagctgatgcaaaaagccacagttttacct
agtagaaaggttgcttatcatgatgataatgaaactgtacaaatgagactatacaaatcc
ttaaaagtttggtccatgtacgctgaccttgaagagagtttcggcacttacaagtcttgt
aaagctgtatatgatcatatcattgatttaaaaatagcaactcctcaaattattattaat
tatggtcttttcctagaagaacacaactattttgaagaggcatttagagcctatgaaaaa
ggcattgctctttttaaatggcctaatgtgtatgatatttggaatacttatttaactaaa
tttttaaagagatatggtggatcaaagcttgaaagagctagagatttatttgaacagtgt
ttagaacattgcccaccagaatttgcaaaagcaatatttctgctttatgcaaagttagag
gaggaacatgggctagccaggcatgcaatggcagtatatgaacgtgctactacagcagtg
ctacctgaagaaatgtttgaaatgtttaacatttacataaagaaagctgctgaaatttat
ggggtgcctaaaactcgacaaatatatgaaaaagcaattgaaactcttccagaggaaaga
gcgagagagatgtgtatacgttttgcggaaatggaaactcgtttaggtgaaattgataga
gccagggccatatactctcactgcagtcaaatgtgtgacccaagaataacatctgaattc
tggaatacttggaaagaatttgaagttagacatggaaatgaggataccatgagagaaatg
cttcgaattaagagaagtgtacaagccacttacaacacccaagtcaacatgatgtctgcg
caaatgttaagttctgcagcacaagctgcaggcactgtttctgatctggcaccgggtata
aaggatggtatgagaatgttagaagcaaaagctgcagaaatggcagttcaaagtaaaggt
ggcaatatattatttgttcgtggtgaaacgcagggtctcaaggaaagtggagataaggtt
ctaaatccggatgaaattgatattgatgaagaagattcagaaaatagtggagacgaggag
gttgcaccggtgcagaagaaagaaatacctgctgctgtatttggaggtcttgctccggga
aaagatcaataa
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