Papilio machaon (common yellow swallowtail): 106717304
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Entry
106717304 CDS
T05138
Name
(RefSeq) exosome complex exonuclease rrp6 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106717304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106717304
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
106717304
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PAM2
Motif
Other DBs
NCBI-GeneID:
106717304
NCBI-ProteinID:
XP_014366621
UniProt:
A0A194QUN7
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MNSTLNPNAPDFYPELKKVTQDGYLTIKRAVKSSKIFTTGKFDSLKTLPAFKSVTSDLCR
YVTSQIEEIVFSETPKVVFTEEDGEECKEEKIAQSINNILDRVNKNLEALCEMEKLQTTD
KNDQNIPPKEEEPMNEEQGQIEQHDLYEGQAMATTSNTQVYNIENIWVPILPEKPNFLVP
LQLKLLYDSNGKAIGYEHPYKIELDIYEPPSNFTNIVPEPIPFPAPLKNTNYKFVNTLSK
LEELVRHLREVDEIAVDVEHHNYRAYRGVTCLVQISTFRGDYVVDAMVLRRHLYKLNYAF
TDPKKIKVLHGADMDVLWLQRDLGVYIVGLFDTYQAAIALDLQNKSLKALLKLYCKVNTD
KKYQTADWRVRPLPYEMVKYARIDTHYLLYIWKRMKNQLLELNDGEKHKLMKVFLSSRDV
CLSTYKKHVVTETSHLSLYQRYHTDFDLSTRSLAALKILYKWRDDYARELDESPAYVLPN
VLMLTLAEKLPTDLKSIREYCPSAKKVLKRSFVKILEMLKTCREMPEPSPPVMPLAIRPL
DEFSYHMLDLPNANTSDENGDVVMEPERIVHESYSAAVKYVTSSPTGSDDNRFCSPYLRY
VKCVKVEKEEKKNDKKEVVVAVNTNTENDLTEFTPIFKSKETREREAEERAKENPEAAME
ADNAGEGTSNDFTLVTRRKRKARAKRDAQDAEDKVGNKPTPPTKRVYYQYTNPNYKNFYT
PRDKAIAKMQLKKRK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaacactaaatcctaatgcccctgatttttatccagaactcaaaaaagtaaca
caggatggctacttaactatcaaaagagcagtgaaatcttcaaagatatttacaactgga
aaatttgattcattaaaaacccttcctgcatttaaatcagtgacatcagatttatgtcga
tatgttacttcccaaatagaagaaatagtattttcagagacacctaaagttgtatttaca
gaagaagacggtgaagaatgtaaagaagaaaaaatcgcacaatcgattaataatattttg
gatagggttaataaaaaccttgaggcattgtgtgaaatggagaaattacaaactacggat
aaaaatgatcaaaacattccgccaaaagaggaagaaccaatgaatgaagagcaggggcag
attgaacagcacgatttatatgagggacaggcaatggctactacatcaaatacccaggtt
tataacattgaaaatatttgggttccaatactacctgaaaaaccaaactttctcgtgcca
ttgcaattgaaattgttatatgattcaaacgggaaagctataggatatgaacatccatac
aaaattgagttggatatatatgaaccgccatcaaatttcactaacattgtaccggagccg
ataccatttcctgcgccgttgaaaaatacaaattataaatttgtaaacacgttgagtaaa
cttgaagagctcgtacgtcatctccgtgaagttgacgagattgctgtggatgtggagcac
cacaattaccgcgcttatcgaggtgtaacttgcttggttcaaatctccacattcaggggt
gattacgtcgttgatgcaatggtgctgcggcgtcacttgtacaagctcaactatgcattt
actgaccccaaaaagatcaaggttctacatggggcagatatggacgttttgtggttgcaa
agggaccttggtgtttacattgttggcttatttgatacttaccaagccgcaattgcttta
gatttacaaaacaagtccctaaaggccttgttgaaattgtactgcaaagttaacaccgac
aagaaatatcaaactgctgactggcgtgtcagaccattgccttatgagatggtgaaatac
gccagaattgatactcactatttgctatacatttggaagaggatgaagaatcaattgctg
gaattgaatgatggagagaagcataaattgatgaaggttttcctttcgagccgagatgta
tgcttgtcgacatacaagaagcatgtggtgacagaaaccagtcacttgtcgttgtatcag
cgatatcacacggattttgatttgtcaacacgttcattggctgctctcaaaatactttac
aaatggcgtgacgattacgcaagagaactagatgaaagtcccgcatacgttttgccaaat
gtgttgatgttaactttggctgaaaaactcccaacggatttaaagagcatacgtgaatat
tgtccgtctgcaaaaaaagttctgaaacgaagttttgttaaaattctcgaaatgttaaaa
acttgccgggagatgccggaaccatcaccacctgtgatgccattagctatcagacctctg
gatgagttctcttaccatatgctcgatctgccaaatgcaaacaccagtgatgaaaatgga
gacgttgttatggagccagaacgtattgtacacgagtcttattctgctgcagtcaaatat
gtgacatctagtcccacaggaagcgacgacaatcgattctgttcaccttacctcagatat
gtgaagtgtgtgaaagttgagaaagaggaaaagaaaaatgataagaaggaggttgtggtc
gcggtgaatacaaatacggagaacgatctcacggaatttactcctattttcaaaagcaaa
gagacacgcgaaagagaggccgaggagagagccaaagaaaatccagaagcggcaatggaa
gcggataatgcgggcgaaggcacttctaatgactttactctagtcacccgacgtaaacga
aaggctcgagccaaaagagacgcacaagatgccgaagataaagttggaaataaacccact
ccacccacaaaacgcgtgtactatcaatacacaaatccaaactataaaaacttctatact
cccagggataaggcaattgcaaaaatgcaattgaaaaaacgcaagtaa
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