Papilio machaon (common yellow swallowtail): 106720365
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Entry
106720365 CDS
T05138
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106720365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106720365
Enzymes [BR:
pmac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
106720365
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106720365
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DNA_pol_A_exo1
PUS7L_N
DUF1947
Motif
Other DBs
NCBI-GeneID:
106720365
NCBI-ProteinID:
XP_014370515
UniProt:
A0A194QL30
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MEITRKNFAEELENITNNLKRSCFVGFDAEFTALLSGECFKYRLFDTNEQRYDKIKDEVS
KMIISQVGLTMFQYDRNKNDYNAVGYTFHLCPQVLGDIDQSFIFQASTLKFLCKHNFNFN
KFIYEGIPYLSKVEEDEIVQQIKNNNLTSYLTSALEIEEEKELQYYSNKVSEWLHSSEDG
TMYIDVQNPIQRYLIHTELRQRFPNILTTDSLGNSNKILIYRDKSIEGANSAKMETLEKN
LIDKLLGFSNIIQLLVQYKKPIIGHNIFMDLLLLHNQFIGPLPKKYSIFKMNINNLFPVI
YDTKYISHEMGKKLTLDEVWQSNILQDLHEFFAKGKYKKLQNGINFITLIPPFNEKQSYH
EAGWDSYCSGFCFIRLGQWAACDNMGVYRPVGPREKMAALAPYCNKVNVIRGATPYMCLD
ENDPPTHRPNLLHIKSLKERIMNIDKVACAVAGCGAADVRALGRRTALVAAGTHFTADKI
LKKFKDSREYRVSTYKPYGQSAARRLAIWSGALITGSLLLMLLHKRVKS
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atggagataacaagaaaaaactttgctgaagaattggaaaacataaccaataatttgaaa
cgttcatgttttgttggattcgacgctgaatttactgctttactatcaggagagtgcttt
aagtacagattgtttgacacaaatgaacaaagatacgataaaatcaaagatgaagttagc
aaaatgattatctcacaagtgggtctcacaatgttccagtatgacagaaacaagaatgat
tataatgctgtgggatatacatttcacttgtgcccgcaagtgttgggagatattgaccaa
tccttcatatttcaagcatctacactcaagtttttgtgtaaacataattttaattttaat
aagttcatttatgagggtattccatatttatcaaaagttgaagaagatgaaatagttcaa
caaataaaaaataataatcttactagctatctaactagtgcattagaaattgaagaagaa
aaagaattacaatattatagcaataaagtcagtgagtggctccacagcagtgaagatgga
acaatgtatatagatgtacagaatccaatacaaagatacctcatacataccgagctccgg
caaaggttccccaacattcttacaactgatagcttaggtaatagcaataagattctaata
tatcgagataagagtatagaaggtgctaacagtgcaaaaatggagacattagagaaaaac
ttaatagacaaattattaggattttcaaacataatacagttattagttcaatacaagaaa
ccaattatcggtcacaatatatttatggatttattacttttgcacaatcaatttataggt
ccattgcctaaaaagtattctatatttaagatgaatataaacaatttgttcccagttatt
tatgatactaaatacatttcacatgaaatgggaaagaaattaacactggatgaagtatgg
cagtcaaatatactacaagatttacatgaatttttcgctaaaggcaaatacaagaagtta
caaaatggaataaactttataacattaattccaccttttaatgagaagcaatcataccat
gaggctggctgggactcttactgttcagggttctgcttcatccggctggggcagtgggcg
gcgtgcgataacatgggtgtgtaccggccagtggggcctcgggagaaaatggccgccctc
gccccttattgtaacaaagtcaatgtcatacgaggcgcgacgccctacatgtgcctcgat
gaaaacgatccgcccacacaccgtcccaatttgttgcacatcaaatctctaaaggagcga
attatgaacatagataaggtggcgtgcgcggtggcggggtgcggggcggcggacgtgcgc
gcgctgggccgccgcaccgcgctcgtcgccgctggcacgcacttcacggctgataaaatt
ctaaagaagttcaaagacagccgggaatatagagtgtcaacatacaaaccgtacggacag
tccgcggcgcgtcgcctcgcgatctggagcggcgctttgatcactggaagcttgttgtta
atgctgctacataagagagtcaagtcgtaa
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