Papilio machaon (common yellow swallowtail): 106720937
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Entry
106720937 CDS
T05138
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106720937
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106720937
03012 Translation factors [BR:
pmac03012
]
106720937
Enzymes [BR:
pmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106720937
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106720937
Translation factors [BR:
pmac03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106720937
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
OB_NTP_bind
HA2_C
HA2_N
nSTAND3
AAA_19
HEPN_AbiA_CTD
AAA_23
AAA_22
FtsK_SpoIIIE
T2SSE
AAA_29
AAA_11
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
106720937
NCBI-ProteinID:
XP_014371228
LinkDB
All DBs
Position
Unknown
AA seq
1048 aa
AA seq
DB search
MSRNSWNRRDQGWKNNRNQRPPGLKGREIGLYYRNLQMESKKKSENISLTIPQPVVTSVK
NNLKQIIFTAKEQDIKLPNIVTTPFSHVATKNIKTEVPDITDASNERKYDEFKPPYPVKT
EKDADTFSNEPSTSSLPDFIPIYSEDEMDFDSNEKQLSLRSSKSYKYAYEDIITGTFDDK
LVESLSKGITINYIDEHTSDLNVSFQEEYKDMITKPKYKNFMKFRETLPTYKKSKDILDL
INNNQVIVISGETGSGKSTQIPQLILDDAITNGKGANVKIMVTQPRRIAASSLAARVAQE
RCDTLGNSVGYSVRLERVEERPRGSIQYCTTGVLLVELEVHQGLTNWSHIILDEVHERDC
HVDISMCMLKQVLKRRQDLKLILMSATLDAETLSHYFDDCPVMKIEGIAYPVKDVYLEDI
LDMTKYKLPETINRQRKLPKSKRYGNRQKQSDEMEKDIKYKAEINGWLESKKRELDYDVY
KTLQDSRIEELNLDLVLELLKRICRGDPGAVLIFLTGIGDISKFLRLMNESNLFPKERYE
IYPLHSKLPSLDQHRIFERPPDHPSSRFRSTSATAELVLVNNAIFXTLTSQVVKDLTRLS
HFSLITXRWIAFFLXXICFDRRGRAGRCQPGICYHMMTSYRASTLPERLLPELQRSNLLE
PVLTVKRLRLGLAADAFNMMPSPPVPSTVQWAVNHLQQCGALDAWETLTPLGWHLARLPL
HPAAGKLLLLATLFGCLDRAASVAAVWSFKDPFQLVIGKEAEVDEVKRSFTLGEPSDHVA
ISEAILQWERCRSRQHRNSFAYSNFLSNNTLELLADMKKQLGDNLKQMGFLASGDVKSRY
ENRNANNMSLFKAIVAAALYPNIATVRWRNMHSRHRPAQLKVYTPEEGNISLHPSSVMAS
SKNPRSNNRPLCNQPGANWLVYWLKQRSTSRFLLEVTLIYTLPLLFFGEFVVNEGKNEDP
DECCFPIKTVTVKVKKEAADILHKLRSLLDLVLARKVTTDQSSYHSRFEEEVIDAVINLI
TAEDEGVEYMDADNSESDSEDSFRSRRY
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtaacagttggaatagacgtgatcaaggctggaagaataaccgaaaccaacga
cctcctggtctaaagggacgagaaatcggattatattatagaaaccttcaaatggagtct
aaaaagaaaagtgaaaatatatctcttacaatacctcagcctgtggtaacctcagttaag
aacaatttgaaacaaataatatttactgctaaagagcaagacattaagctaccaaatatt
gtcacaactccattttctcatgttgcgacaaagaacataaaaacagaagttcctgatatt
acagatgctagtaatgagcggaaatatgatgaatttaagcctccatatccagtaaaaact
gaaaaagatgctgatacattttctaatgaaccaagtacatcatctcttcctgactttata
ccaatttacagtgaagatgaaatggactttgatagtaatgaaaaacaactatcacttaga
agttcaaaatcttataaatatgcttatgaagatataataacgggaacatttgatgataaa
cttgtggaaagtttatctaaaggtattactataaactacatagatgaacatacaagtgat
ctaaatgtttcctttcaagaggaatacaaagatatgatcacaaaaccaaaatacaaaaat
ttcatgaaatttcgtgaaacattaccaacatataagaaatctaaagatatactagatctt
attaacaataaccaagttattgtcataagtggtgaaactggaagtggaaaatcaacgcag
ataccacaacttatcctagatgatgcaataacaaatggtaaaggtgctaatgttaaaata
atggtgactcagccgaggagaatagctgcttcatctcttgcagctagagttgctcaggag
aggtgtgatactttgggaaattctgtaggctactctgttcggttagagagagtagaagaa
aggcctcgtggcagcatccagtattgcacaacaggggtgctacttgtcgaactggaagtg
catcagggtctgacaaattggagtcatataatactagatgaagtccatgaaagggactgt
catgttgatatatctatgtgcatgttgaaacaggttttaaaaaggcgtcaagatttaaaa
ctgatattaatgagcgctactttagatgctgaaactttatctcattattttgatgattgt
cctgtgatgaaaatagaggggatagcgtatcctgttaaagatgtgtatttagaagatatt
ttggacatgacaaagtataaacttccggaaacaatcaatagacaaaggaagctgccaaag
tctaagcgatatggaaacagacagaaacaatcagatgaaatggaaaaagatataaaatat
aaagcagaaattaatggttggttagaatcaaagaaacgtgaactcgattacgatgtttac
aaaacactgcaagactcaaggatcgaagaattaaatctagatctagttctagaacttttg
aaacgtatctgcaggggagatcccggtgctgttctgatattcttaactggcatcggagac
atatcaaagtttctaagattgatgaacgaaagtaatctattcccaaaggaacgctatgaa
atttaccccttacattcaaaactaccgtctctagatcaacatagaatattcgaaagacca
ccggatcacccttcgagtcgtttccgcagcactagtgccacggcggaactcgtactcgta
aataatgcgatattttaaacacttaccagtcaagttgtaaaggacttaactagacttagt
catttttctttgatcacttgacgatggatagcatttttcctatagtgaatctgttttgac
agacgaggtcgtgcgggccgctgccagcctggtatttgctaccacatgatgacgtcatac
cgtgcctccacacttcctgaacgtctgctgcccgagttacagaggagcaatctgttagaa
ccggtgcttactgttaagagattgagacttgggttggcagctgatgcatttaacatgatg
ccctcgccgcctgtaccttcaactgtacaatgggctgtaaaccatttgcaacagtgtgga
gcgctggacgcgtgggagacactgacgcctctaggctggcacttggcacgactgccgctg
catcccgcagctggcaagttgcttcttctggccacactcttcggctgcctcgaccgcgcc
gccagcgtcgccgctgtatggagcttcaaagatcccttccagctcgtcattggcaaagaa
gcagaagttgatgaggtgaaacgtagctttacattgggcgaacctagcgaccatgttgct
atatcagaggctatattacaatgggaacgatgcagatcgcgacaacatagaaattctttt
gcatactcaaacttcttatcaaataatactctagaactattagccgatatgaagaagcag
ttgggtgataatctaaagcagatgggcttccttgcctccggtgatgtaaaatctcgctat
gaaaacagaaacgccaacaatatgagtctcttcaaagcgatcgttgcggcagcactttat
cctaatatagctacagttagatggagaaacatgcactcaaggcatcgacccgcacaactc
aaagtatatactcccgaagaaggtaacatatctctccatcccagtagtgtaatggcgtcg
tcgaagaacccgaggtctaataatagacctctgtgtaaccagcctggagctaactggctg
gtgtactggcttaaacaacgatctacctcacgttttctgttagaagttacattaatatat
actctacctctgctctttttcggcgagtttgtagtgaacgagggtaaaaatgaagaccca
gacgaatgttgttttccaataaagacagtcacagtaaaggtgaaaaaagaagccgccgat
atcctgcacaaattgagatcgttactagatttggtgttagctcgcaaagttacaacagat
caatcttcatatcacagtagatttgaagaggaagtaattgatgctgtcatcaaccttata
acggcagaagatgaaggtgttgagtatatggatgccgataattctgagtctgactccgag
gactcgtttagaagtagaagatactaa
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