Papilio machaon (common yellow swallowtail): 106721679
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Entry
106721679 CDS
T05138
Name
(RefSeq) LOW QUALITY PROTEIN: helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pmac
Papilio machaon (common yellow swallowtail)
Pathway
pmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106721679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmac03019
]
106721679
Enzymes [BR:
pmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106721679
Messenger RNA biogenesis [BR:
pmac03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106721679
mRNA degradation factors
3'-5' decay
Ski complex
106721679
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
MTR4-like_stalk
ResIII
DEXQc_Suv3
Caudo_TAP
Motif
Other DBs
NCBI-GeneID:
106721679
NCBI-ProteinID:
XP_014372187
LinkDB
All DBs
Position
Unknown
AA seq
1263 aa
AA seq
DB search
MSAQIENEFADFKIPPIFDDLNDRVKEYLLKPERLSIHKWERSQTHWHRKTDIDSLIKFE
DEDIGLDTTLDIIRDPITGEIVGLEEVSIPVEDDEDCLSMARAPLPPSLATRGTTTQNPF
LPAGFEEELQKMLDEATKSGEININLEDDEPGKFLGEEILTTPPGSNESVLFDNDGFTLL
KSGSTGEQKLDKEDIDKLVKINLEEVVDNNVHLVDLWKDDDGAYDESKPKTVQKPKKIDL
DIDTTESDNFLENTIIKPPVELPEIPVLNITSSKGRMAVTSTDWAEMIDVTLPVPDFREK
IRDMAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMXRRNYKKSSYV
RLLVLSYLPINFQLNQFDRSXVINSVTNTTTGDLQINATASCLVMTTEILRSMLYCGSDV
TRDLEFVIFDEVHYINNAERGYVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKR
KVFVVSTPKRPVPLCHYLYTGTGGKSKHERFMIVDQESNFLLRGYNEAVAAKKSRENEYK
KSFGPKGTKQYMNPKAEQTMWVAFIDHLRQSDKLPVVAFTLSRNRCDQNAENLMSVDLTT
AKEKGHIRNFFQKCLQRLKKPDRVLPQVIRMQRVLENGIGVHHSGILPLLKEIVEMLFQS
GFVKILFATETFAMGVNMPARTVVFDDITKFDGVQSRHLMPAEYIQMAGRAGRRGLDDTG
TVIILCKEEVPNQIKLKEMMLGTPEKLSSQFRLTYAMILSLLRAATVSVEGMMQRSFREF
YQICQADNHRKQLELAEKEYSQKCSTPLPAHLAPLATFYDTAAAYIDVLNDIMPILLGQP
KVAKELIPGKILILSAGPYINQLGIYLNSAGPRQTPYKVLVLNTIEQDPNKYNFDLDESW
YRMLSFTAMYDGIGTEEGTLNHSILCIAPKNIIAVTKMTLKIDASRIIQDWDQRQIPRFK
DAPVGSSCAAAVQELSRLSHAVRTGASALERVSLTQSLSITTGEVLQSLDKMNKYKDMLE
SQKKSTDIANFKTEFAIVYERKQAERKRDKYKLILSFENLALYPDYQRRLLVLRELNYID
EHDSVILKGRVACGMGTNELIISELVFRNVFTDKNPAEIAALLSCFVFQAKTNVSQPLTD
KLKEGVDAIKAIDEDLTSIESKYLVSQFEGQGERLNFGLIRVVYEWALEKPFAEIMDLTD
VQEGIIVRCIQQLHELLIDVKDAAVAIGDPKLQAKMQEASTAIKRDIVFAASLYTTARET
VIS
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctcagatagaaaacgaatttgctgattttaagataccaccaattttcgacgat
ttaaatgatcgtgtgaaagaatatttgttaaaacctgaaagactatcaatacataaatgg
gaaagatcacaaacacattggcacagaaaaacggacattgattccttaattaagtttgaa
gatgaagatattggtctagataccacattagatatcatcagagaccctataactggagag
atagttggtttagaagaagtgagtatacccgtggaagatgatgaagattgcttgtctatg
gcccgggcacctctgccaccaagtcttgcaacaaggggaaccacaacacaaaaccctttt
ttacctgccggctttgaggaggaactccagaaaatgttagatgaagcaactaaaagtggt
gaaataaatattaacttggaagatgatgaacctggaaagtttttaggagaagaaatacta
actacgccaccaggaagtaatgaaagtgttctttttgacaatgatggtttcactctacta
aaaagtggcagtactggtgaacaaaaattagacaaagaagatattgataaacttgtgaaa
attaatcttgaagaagttgttgataataatgtgcatttagtagatctatggaaagacgat
gatggtgcctacgatgaatcaaaacctaaaacagttcaaaagccaaagaaaatcgatcta
gatattgatacaactgagagtgataacttcttagagaatactataataaaacctccggta
gaacttccggagataccagtactcaatattacaagttctaaaggcaggatggcagtgaca
tcaactgattgggcagaaatgattgatgttacactccctgtaccagattttagagagaaa
ataagagatatggcacactcttatccatttgaattggataattttcagaagcaggctata
ctaaaactggaggaaggtcatcacgtgttcgtggccgctcacacctcagccggtaagact
gttgttgcggagtacgctattgctatgtaaaggagaaattataaaaaaagttcctatgtc
cgtctcctagttctaagctacctccccatcaattttcagctaaaccagttcgaccgatct
tgagttataaatagtgtaactaacacgacgaccggggacctgcagatcaacgcgaccgcc
tcctgcctcgttatgaccacagagatcctgcgctcaatgctctactgcggctctgatgtc
accagagacttagagttcgttatatttgatgaagtacattatattaataacgctgagcgt
ggttacgtatgggaagaggtacttatattgttacctgcgcacgtaagcatagttatgtta
agtgcaactgtacctaatactcttcaattcgctgactgggtgggacgtactaagaaacgg
aaagtattcgttgtgtcaacaccgaagagaccagtgccactatgccattacttatataca
ggtaccggtggtaaatctaaacacgaacgattcatgatagtagatcaggaaagtaatttc
ctattgagaggatacaatgaggctgttgccgccaaaaagtccagagagaatgaatataag
aaaagcttcggaccaaaaggtacaaagcaatacatgaacccgaaagctgaacaaacaatg
tgggtggcgttcatagaccatttgcggcaatcggacaagctgcctgttgtcgctttcaca
ctttctaggaacaggtgcgatcaaaatgcagagaatttaatgtcggttgatctcactacg
gccaaagaaaaggggcacattaggaatttcttccagaaatgtctacagagactaaagaag
ccggatagagtgttgccacaggttatcagaatgcagagggtccttgaaaatggtattggt
gttcatcacagcggtatcctgcctttgttaaaggaaatcgtagaaatgttattccaatcg
ggcttcgttaaaattctgttcgcaacggagacatttgcgatgggtgtgaacatgccggcg
cgtactgttgtattcgatgacattaccaaatttgacggcgttcagagtcgccatcttatg
cccgctgagtacatacagatggcgggacgagccggcagaagaggtttggatgacacaggc
actgtcataattctctgcaaagaagaagtgccaaatcaaattaaattaaaagaaatgatg
ttgggtacccctgaaaaactttcttctcagttccgtcttacttacgccatgatactcagt
ctattgagagccgcaactgtatcagtggaaggtatgatgcagcgttcttttagggaattc
tatcagatatgtcaagctgataaccatagaaaacaactggaattagctgaaaaagaatat
agtcagaaatgcagtacaccattgcctgcgcacttagcgcctctagcgacgttttatgac
actgccgcggcttatattgacgtccttaatgatataatgcctatactcctcggacaacct
aaagtagccaaggaattaatacctggaaagatcctaatactgtccgcagggccttatata
aatcaacttggaatttatttgaatagtgcaggtcctcgacaaactccatataaagtgttg
gtattgaacacgatcgaacaagaccctaataagtacaattttgatttggatgaaagttgg
tacaggatgcttagttttactgctatgtatgatggaataggtactgaagaaggcacgctt
aaccactcgatactctgcattgcaccaaagaacataatcgctgtcaccaaaatgacatta
aaaatagatgccagccgtatcattcaagattgggaccagagacagattccaaggttcaaa
gacgctccagtgggatctagttgtgcggccgcggtacaggaactgtcacgcttgtcgcac
gccgtacgcactggcgccagcgcactggaacgtgtcagtctcacacagtcactctccatc
actactggagaagttctgcaatcgcttgacaagatgaacaagtacaaggacatgttagaa
tctcaaaagaaatcaactgatatcgcgaactttaaaacagaattcgctatagtttacgaa
agaaagcaagctgaaaggaagcgggataaatacaaattaatattatcatttgaaaactta
gctttgtacccggattatcaacgaagactgttagtgttacgtgaattgaattacatagac
gaacatgatagtgtcatattgaaaggtcgtgtggcatgtggcatgggtaccaacgaactc
attatatcggagctggtctttcgtaatgtgttcactgataaaaacccagcggagatagcg
gctttgttaagttgttttgtattccaagccaagacaaatgtcagccagccgttgactgat
aaattaaaagaaggtgttgatgctatcaaagccatcgatgaagatttaacatcaattgaa
tctaaatatctggtcagtcaatttgaagggcaaggagaaaggttaaactttggtttaatt
agagttgtatatgaatgggccctcgagaaaccctttgcagagataatggatttaacagat
gtgcaagaaggcatcatagtcaggtgtattcaacaactacatgaattgttgattgacgta
aaagacgccgctgttgcaataggagacccgaagcttcaagccaagatgcaagaagcgtct
accgctattaaaagagatattgtctttgctgccagtttgtacacaacagctagagaaact
gtaatatcataa
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