Prauserella marina: BAY61_09365
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Entry
BAY61_09365 CDS
T04988
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmad
Prauserella marina
Brite
KEGG Orthology (KO) [BR:
pmad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmad03019
]
BAY61_09365
Enzymes [BR:
pmad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BAY61_09365
Messenger RNA biogenesis [BR:
pmad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BAY61_09365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
SLFN-g3_helicase
AAA_23
TsaE
Motif
Other DBs
NCBI-ProteinID:
ASR35156
UniProt:
A0A222VMK1
LinkDB
All DBs
Position
2035674..2039642
Genome browser
AA seq
1322 aa
AA seq
DB search
MSTSTPADELRARLPELTLRDEHRLRRRIDGVNRRGRKDRHGRGRGGDKRGGAESGGPAG
ADGFSESAVLATIAADIEAAEQRVRHRRDAVPELRYPEDLPVSRRKADIAEVIRDNQVVI
VAGETGSGKTTQLPKICLELGLGVRGQIGHTQPRRLAARTVAERVASELNTELGSVVGYK
VRFTDQSGDDTLVKLMTDGILLAEIQQDRMLRAYDTIIIDEAHERSLNIDFLLGYLRRLL
PSRPDLKVIITSATIDPERFSRHFGDAPIVEVSGRTYPVEVRYRPVVDPDDPGADPDRDQ
VQAISDAVTELIGEGQGDILVFLSGEREIRDTSEALTAMALPYTEILPLYARLSAADQHR
VFQRHTGRRVVLATNVAETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASAN
QRKGRCGRTSDGICIRLYTEDDFDSRPEFTDPEILRTNLASVILQMTSLGLGDIAAFPFV
EPPDRRQVTAGVQLLSELGALEADGGKLTTVGRQLAQLPVDPRMGRMIVEAAANGCVREV
MIIAAALSIQDPRERPADKQQAAAEKHARFAEPNSDFLAYLKLWEYLREQQRALSGNQFR
KLCKAEFLNYLRVREWQDIFGQLRQLAKPLGITLNSTEADPQRIHTSLLAGLLSHVGLKD
PAKGDYLGARGARFSVFPGSSLFKKQPRWVASAELVETSKLWARVNARIEPEWVEPLAQH
LVKRHYSEPHWERKQGAVMANERVTLYGIPLVAGRKVNYGRIDKELSRELFIRHALVEGD
WETSHRFFIENRKLLDEVEDLEARARRHDILVDDETLFAFYDERVGEDVVSSRHFDSWWK
QRRRSEPDLLNFEKAMLINESADEVAEADYPDTWQAGALRLSLTYQFEPGADADGVTVHI
PLPVLNQVSAAGFEWQVPGLREELVTALIKSLPKSLRRNFVPAPDTARKALSGVDPSMGP
LPDVLGAELERLRGVAVAPEAWQFSSVPDHLRMTFRVVDERKRTLAEGKDLDALRDRLGD
RLRETISAVADDLEKEGLRTASFGELPKVFTATRKGHELKAYPALVDEGGCVAVRMLDTE
GQQRTQMWLGTRKLLRLNVASPMKYLNRNLGNTAKLVLTRNPHGSVAALLEDCVDCAVDK
LMADAGGPAWDEAGFAVLLEKVRAGLNGTVLTVLREVENILAATHDVESRLADTRGDAVR
ESVADVRAQLDGLVFPGFVTAAGFDRLADLVRYARAIERRLEKLPGDPARDVRNLRDVQW
LWQEYQAVLDTLPPRTAPGKQLADVRWMIEELRVSFFAQTLRTAYPVSMKRVLRALDEAA
AD
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
atgtccacttccacccctgctgacgagttgcgcgcgcggctgcccgagttgacgctgcgc
gacgagcaccgcttacgacgccggatcgacggcgtgaaccggcgaggccggaaagaccgg
catggccgggggcgcgggggcgacaagcgtggcggtgccgagtccggcggtccagccggg
gctgacgggttttcggagtccgccgttctggccacgatcgccgccgacatcgaggccgct
gagcagcgcgtgcggcaccgccgcgacgcggtgcccgagttgcgctaccccgaagacctg
ccggtgagcaggcgcaaagccgacatcgccgaggtcatcagggacaaccaggtggtgatc
gtcgcgggcgagacgggatcgggcaagacgacgcagcttcccaagatctgtctcgaactg
gggctcggggttcgtggtcagatcgggcacacccagccgcgcaggctcgcggcccgtacg
gtcgccgagcgcgtcgccagtgagctgaacaccgaactcggttccgtggtgggctacaag
gtgcggttcaccgaccagtccggtgacgacacgctcgtcaagctcatgaccgacggcatc
ctgctcgccgagatccagcaggaccggatgctgcgcgcctacgacacgatcatcatcgac
gaggcacacgaacgcagcctcaacatcgacttcctgctcggctatctgcgcaggctgctg
ccgagcaggcccgatctcaaagtgatcatcacctcggcgaccatcgaccccgagcggttc
tcccggcatttcggggacgccccgatcgtcgaggtgtccggccgcacctatcccgtcgag
gtgcgctaccgccccgtcgtcgaccccgacgaccccggcgccgatcccgaccgcgaccag
gtgcaggcgatctcggacgcggtgaccgaactgatcggtgagggacagggcgacatcctg
gttttcctctccggtgagcgcgagatccgcgacaccagcgaggcgctgacggcgatggcc
ttgccctacaccgaaatcctcccgttgtacgcgcggttgtcggccgccgatcagcacagg
gtcttccagcgccacaccggaaggcgcgtcgtgctcgccaccaacgtcgcggagacctcg
ctcaccgtgcccggcatcaagtacgtcatcgatccgggtacggcacgcatctcccgctac
agccaccgcacgaaggtgcagcggctgccgatcgaaccggtgtcgcaggcttcggcgaat
cagcgcaagggccggtgcgggcgtacctccgacggcatctgcatccggctctacaccgag
gacgacttcgactcccgcccggagttcaccgatccggagatcctgcgcaccaatctcgcc
tccgtgatcttgcagatgacctcgctcggcctcggtgacatcgccgctttccccttcgtg
gagccgccggaccggcgtcaggtcaccgccggtgtgcagttgctgagcgaactgggcgcg
ctggaggccgacggcggcaagctcaccaccgtcgggaggcagctcgcgcagcttccggtc
gatccgagaatgggcaggatgatcgtggaggcggcggccaacggctgcgtccgcgaggtg
atgatcatcgccgccgcgctgtccattcaggacccgcgagaacgccccgccgacaaacag
caggccgccgccgaaaagcacgcgcggttcgccgaaccgaactccgacttcctcgcctac
ctgaaactgtgggagtacctgcgcgagcagcagcgggcgctgtccggcaaccagttccgc
aagctgtgcaaggccgaattcctcaactacctcagagtcagggagtggcaggacatcttc
ggtcagctcaggcaactggccaagccacttggcatcaccctcaacagcaccgaggccgat
ccgcagcggatccacacctcgctgctggccggtctgctctcccacgtcgggctcaaggac
ccggccaagggtgactacctcggcgcccggggcgcccggttctccgtcttccccggatcg
tcgttgttcaagaagcagccgcgctgggtcgcctcggccgaactggtggagacctcgaag
ctgtgggcgagggtcaacgccaggatcgagccggagtgggtggaaccgctcgcgcagcac
ctcgtcaaacggcactactcggaaccgcactgggaacgcaagcagggcgcggtgatggcc
aacgagcgggtcaccctgtacggcatcccgctcgtcgcgggccgcaaggtcaactacggg
cggatcgacaaggaactgtcgcgggagctgttcatcaggcacgcgctcgtcgagggcgac
tgggaaaccagccaccggttcttcatcgagaaccggaaactactcgacgaggtcgaggac
ctcgaagcgcgcgcccgcaggcacgacattctcgtcgacgacgagaccttgttcgccttc
tacgacgagcgcgtcggcgaggacgtggtgtcgagcaggcatttcgactcgtggtggaag
cagaggcggcgctcggagcccgacctgctcaacttcgagaaggccatgctcatcaacgag
agcgccgacgaggtcgccgaagcggactaccctgacacctggcaggccggagcgctgcgg
ctgtcgctgacgtaccagttcgaaccgggcgccgacgccgacggcgtgaccgtccacatt
ccacttcccgtgctcaaccaggtgagcgccgccggtttcgaatggcaggttcccggtctg
cgcgaggaactggtcaccgcgctgatcaagtcgctgccgaagtcgttgcggcgcaacttc
gtccccgctccggacaccgcgcgaaaggcactgtccggagtggacccctcgatgggcccg
ttgcccgatgtgctcggtgccgaactcgaacgccttcgcggagtagcggtcgcgcctgag
gcgtggcagttctcctcggtgcccgatcacctcaggatgaccttccgggtcgtcgacgag
cgtaagcggacgctggcagagggcaaggacctcgacgcgctgcgcgaccggctcggcgac
cgccttcgcgagaccatttccgccgttgccgacgatctcgaaaaggaaggcctgcgcacg
gccagtttcggtgagctgccgaaggtgttcacggccacccgcaagggacacgagctcaag
gcatatccggcgctcgtcgacgagggtggctgtgtcgcggttcgcatgctcgacaccgag
ggacagcagcgcacccagatgtggcttggcacgaggaaactgctccggctcaacgtcgcg
tcccccatgaagtacctcaaccgcaacctcggcaacaccgcgaagctcgtgctgacaagg
aatccgcacggcagtgtcgccgcgttgctcgaagactgcgtcgactgcgcggtggacaag
ctcatggccgacgcgggcggtccggcgtgggacgaggccggtttcgcagtgctgcttgag
aaggtgcgggccggattgaatggcaccgtgctcacggtgctgcgcgaggtggagaacatt
ctcgccgccacgcacgacgtcgaatcgcggctcgccgacacgaggggagacgcggtgcgc
gaatccgtcgccgatgtgcgggctcagctcgacgggctggtgttccccggattcgtgacg
gcggcgggattcgaccggctcgccgacctcgtgcgctacgcgcgggcgatcgagcgcagg
ctggagaagctgcccggcgacccggcgcgggacgtgcggaacctgcgggacgtccaatgg
ttgtggcaggagtaccaggcggtgctcgacacgttgccaccgagaacggcgccaggcaag
caactcgccgacgtgcggtggatgatcgaggagctgagggtgagcttcttcgcccagacc
ctgcgcaccgcctacccggtgtcgatgaagcgcgtgctgcgcgcgctggacgaggccgcc
gcggactga
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integrated database retrieval system
