Prauserella marina: BAY61_25545
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Entry
BAY61_25545 CDS
T04988
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pmad
Prauserella marina
Pathway
pmad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAY61_25545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmad03021
]
BAY61_25545
03019 Messenger RNA biogenesis [BR:
pmad03019
]
BAY61_25545
Transcription machinery [BR:
pmad03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BAY61_25545
Messenger RNA biogenesis [BR:
pmad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BAY61_25545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
ASR37809
UniProt:
A0A222VV51
LinkDB
All DBs
Position
complement(5571608..5573569)
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AA seq
653 aa
AA seq
DB search
MSNTDLLSGDVNTQASPGSGEQAPQSNGAGAAPKRRPGGLSGMVIAELRALATELGVGDT
TGMRKGDLIAAIRERQGKTKRGRTTSNSSETLPLEGIGEAKAAEKADAPGKSSERAKVDK
APAKQDKAAKPAQDGEARKSPVKTDGSAQAEQRDDERSDETGGRSNRRRRGSSRPAGSQD
NAQQRDEDNNRGESAERGGSGGDDRRPNGGQREGGQRNQRDNQQRDNQRNNNKDDQDDDE
RGGRRGRRFRDRRRRGGRGEGSGGGGTDTEIRDDDVLLPVAGILDVLDNYAFVRTSGYLP
GPNDVYVSLSLVRKHGLRRGDAITGVVKQPKEGEQQRQKFNPLVRVDSVNGLEAEVAKKR
PEFHKLTPLYPNERLRLETQSNKLTTRVIDLVMPVGKGQRALIVSPPKAGKTTIMQDIAN
AITTNNPECHLMVVLVDERPEEVTDMQRSVQGEVIASTFDRPPSDHTSVAELSIERAKRL
VEMGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALFPPKRFLGAARNIEDGGSL
TIFATAMVETGSTGDTVIFEEFKGTGNAELKLDRKIAERRVFPAVDVNPSGTRKEELLLS
PDELAVTHKLHRVLHALDSQQAIDLLIDRLRKTKTNIEFLMQVSKTAPGNDDD
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaacaccgatcttttaagcggcgacgtgaatacccaggcatcgccgggttccggg
gagcaggcgccgcaatccaacggtgccggcgcggcaccgaaacggcgtccgggtggactg
tccggcatggtcatcgccgaacttcgcgcgctggccaccgagctgggcgtcggtgacacc
accggaatgcgcaagggcgatctgatcgccgccatccgggagcgccaaggcaagacgaag
cgggggcggaccacgtcgaacagcagcgagacgctgccactcgaaggcattggcgaggcc
aaggccgccgagaaggccgacgctcctggcaagtcttcggagcgggcgaaggtcgacaag
gcccccgcgaagcaggacaaggccgcgaagccggcgcaggacggtgaagcacggaagtcg
ccggtgaagaccgacggttcagcgcaagccgagcagcgtgacgacgagcggtccgacgaa
acggggggccggtccaacaggcgcaggcgtggttcgagcaggcccgcgggcagccaggac
aacgcgcagcagcgcgatgaggacaacaaccgaggcgagtccgccgagcgcggcggttcc
ggtggggacgaccgcaggccgaacggtggtcagcgcgagggcggtcagcgcaaccagcgc
gacaaccagcagcgcgacaaccagcggaacaacaacaaagacgaccaggacgacgacgag
cgcggtggccgccgtggccgcaggttccgtgatcgcaggcgccgtggtggccggggcgaa
ggcagcggcggcggtggcaccgacacagagatccgcgacgacgacgtcctgcttcccgtc
gcgggcattctcgacgtgctcgacaactacgcgttcgtgcggacctccgggtacctgccg
ggtcccaacgacgtctacgtctcgctgtcgctcgtgcgcaagcacggcctccggcgcggc
gacgcgatcaccggcgtggtcaagcagccgaaggaaggcgagcagcagcggcagaagttc
aacccgctggtgagggtcgactcggtcaacgggcttgaggccgaggtcgccaagaagcgg
cccgagttccacaagctgaccccgttgtaccccaacgagcggctgcggcttgagactcag
tccaacaagctgaccacgagggtcatcgacctcgtcatgccggtcggcaagggacagcgc
gcgctgatcgtgtcgccgccgaaggcgggtaagaccacgatcatgcaggacatcgccaac
gcgatcacgacgaacaaccccgagtgccatctcatggtcgtgctcgtcgacgagcggccg
gaagaggtcaccgacatgcagcggtcggtgcagggagaggtcatcgcctcgaccttcgac
cgcccgccgtcagaccacacctcggtcgccgaactgtcgatcgagcgggcgaagcggctc
gtggagatgggacacgacgtcgtcgtgctgctcgactccatcaccaggctcggccgtgcc
tacaacctggcggcaccggcctccggccggatcctctccggtggtgtcgactcgaccgcg
ctgttcccgccgaagcggttcctcggcgcggctcgcaacatcgaggacggcggttcgctc
acgatcttcgcgacggcgatggtggaaaccggttccaccggtgacaccgtcatcttcgag
gagttcaagggcaccggtaacgccgagctcaagctcgaccgcaagatcgcggaacgcagg
gtcttccccgccgtcgacgtcaacccgtcgggtacgcgtaaggaagagctgctgctttcg
cctgacgagctcgcggtgacccacaagctgcacagggtgctgcacgcgctcgattcgcag
caggccatcgatctgctgatcgaccggctgcgcaagacgaagacgaacatcgagttcctg
atgcaggtgtccaagacggcgcctggcaacgacgacgactga
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