Paenibacillus macerans: LMZ02_01305
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Entry
LMZ02_01305 CDS
T09394
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmae
Paenibacillus macerans
Pathway
pmae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LMZ02_01305 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmae03021
]
LMZ02_01305 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_01305 (rpoC)
Enzymes [BR:
pmae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LMZ02_01305 (rpoC)
Transcription machinery [BR:
pmae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LMZ02_01305 (rpoC)
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LMZ02_01305 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
UMV48079
LinkDB
All DBs
Position
complement(250135..253749)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DLDIDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFKSSGNEPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKE
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKDAQGSGMILSSVNEAVSAYQRGTASLHARVAIP
AKALGKTSFTEAQQNALLITTVGKIIFNEIFPASFPYINEPTRVNLFQGTPDKYFIHEKG
VDIVERIMNAPQAGGVGKEYLGEIIGRCFEIYQTTETSVILDRIKQTGFTYSTRAGVSIA
VADVIVPQEKQDILRESEEKVRVVTNQYRRGLITNEERYDRVIDIWSKCKDQITDILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPAGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVGVIQDGKEVIENL
YDRIEGRYSFETVRHPETGEIIIHRNELIDSDKAHEIVDAGITKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIREAKDRREIEVQGEAETKVYSVTYGSRLRVSEGDQIEA
GDELTDGSIDPKEILRIKGIRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDSGDTPLLPGSFVDLHEYEMANKEAILSGQEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRSLQFEESELDETSEESLEP
VSVE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaacttcgagtttatgaaaattgggcttgcttccccagacaaaatt
cgttcttggtcccgcggagaagtgaagaaaccggaaacgatcaactaccgcacgttgaaa
ccggaaaaggaagggctgttctgcgagaagattttcggcccgaccaaagactgggaatgc
cattgcggtaaatataagagagttcgctacaaaggcgtagtctgcgaccgctgcggcgtc
gaagtgacgagagcaaaagtgcgccgcgagcggatgggccatatcgagctggccgctccg
gtgtcccacatttggtacttcaaagggattccgagccgcatgggccttgcgcttgacatg
tcgccgcgttcgctggaagagatcatttattttgcatcttatgtcgtgacggatccgggt
gaaacaccgctggagaaaaagcagcttttgtccgagaaggaataccgcagctatcgcgag
aaatacggttacggtttccaagccggcatgggtgcggaagcggtgaagaagctgcttcag
gatctcgatatcgacaaagagctcgaatttttgaaagaagagctgcgcacggcacaaggc
cagcgccgcaaccgggcgatcaaacggcttgaagtgatcgaagcgttcaagagctccggc
aacgagccggagtggatgatcctcgacgtgcttccggtcattccgccggaactccgtccg
atggttcaactcgacggcggacgtttcgccacgtctgacctgaacgatctgtaccgccgc
gtcatcaaccggaacaaccgtttgaaacggctgcttgatctcggcgcgcccgatatcatt
gtgcaaaacgaaaaacggatgctgcaggaagcggtggacgccttgatcgacaacggccgc
cgcggccgcccggtaacgggcccgggcaaccgtccgcttaaatccttgagccatatgctg
aaagggaaacaaggccgtttccggcaaaacctgctcgggaaacgcgtcgactactccgga
cgttccgttatcgttgtaggaccgtatttgaaaatgtatcaatgcggcctgccgaaagaa
atggcgctggagctgtttaagcctttcgtgatgaaagagctggtcaacaaaggcctggcg
cacaacatcaagagcgcaaagcgcaaagtcgaacgcgtaagccccgaagtttgggatgtg
ctcgaagaggttattaaggaacatccggttctgctgaaccgtgctcctacgcttcaccgt
ctcggtattcaggcgtttgaaccgattcttgtcgaaggacgcgccatccgtcttcacccg
ttggtatgtacggcttacaacgccgacttcgacggcgaccagatggccgtgcacgtgccg
ttgtcggcggaagcccaagcggaagcgcgcattctgatgctggcttccggcaacattctg
aacccgaaagacggcaagccggtcgttacgccttcgcaggacatggttctgggctcctac
tatctgacgatggacaacaaggacgctcaaggctccggcatgattttgtcctcggtcaac
gaagcggtatccgcttatcaacggggaacggcttccctgcatgcgcgggtggctatcccg
gcgaaagctttgggcaaaacgagctttacggaagcgcagcaaaacgctttgctgatcact
acggtcggtaaaatcatttttaatgaaattttcccggccagcttcccgtacattaatgaa
ccgacccgcgtgaacttgttccaaggaacgccggataaatattttatccatgaaaaaggc
gtggacatcgtggagcggatcatgaatgcgccgcaagcgggcggggtcggcaaagaatac
ctcggggaaattatcggacgctgcttcgaaatctaccaaacgacggaaacttccgtcatt
ctggacagaatcaagcaaaccggctttacttactccacacgtgccggcgtaagtattgcg
gtggcggacgttatcgttccgcaggaaaagcaggacattctgcgcgaatccgaggagaaa
gtacgggttgtcaccaatcaataccgccgcggtctaatcacgaacgaagagcggtacgac
cgcgttatcgatatctggtccaagtgtaaggatcaaattaccgatatcctaatgaagtcg
atggaccgctacaactccatcatgatgatggtcgattccaaggcgcgggggaacaaatcg
cagatcacccagctgggcggtatgcggggcctcatggccaacccggccggccgcatcatc
gaacttccgatcaaatcgaacttccgcgaaggcctcacggtcctggaatacttcatttcg
acgcacggcgcgcggaaaggtctggccgataccgcgctgcggacggcggactccggttat
ttgacccgccgtctcgtcgacgtggctcaggacgttatcgtgcgcgaggaagattgcggt
acggataaaggctttaccgtcggcgtgattcaggacggcaaagaggttatcgaaaatctg
tacgaccggatcgaaggccgttactcgttcgaaacggtacggcatccggaaaccggcgag
atcatcattcaccggaacgagctgatcgattccgacaaagcgcatgaaatcgtggacgca
ggaatcacgaagctgcaaatccgttccgtgctcagctgccgtgcccgtcatggcgtctgc
aaaaagtgctacggccgcaacctggccaccggcaaacacgtggagatcggcgaagctgtc
ggcattatcgccgctcagtcgatcggcgaaccgggaacccagctcaccatgcgtacgttc
cataccgggggcgttgcgggcgacgacattacccaaggtttgccgcggattcaggaactg
tttgaagcccggaatccgaaaggtcaagccacgatcagtgaaatcgacggcgtgatcaag
gaaatccgcgaagcgaaggaccgccgcgaaatcgaggtacaaggcgaagcggaaacgaag
gtctactccgtcacctacggttcccgtctgcgcgtaagcgaaggcgaccaaatcgaggct
ggggacgaactgaccgacggttccatcgacccgaaagaaattttgcgcatcaaagggatt
cgcggcgtacagaactacattttgcaggaagttcagcgcgtataccgcaaccagggcgta
gaaatcaacgacaagcacgtcgaggttatgatccgccagatgctgcgtaaaatccggatc
gtcgattccggcgatacgccgcttctgccgggctctttcgtcgatctgcacgagtacgaa
atggcgaacaaggaagccatcttgtccggccaagagcccgctgtggccaaaccggttctg
ctcgggattacgaaagcgtcgctcgaaacggattccttcctgtcggccgcttccttccag
gaaacgacgcgcgtgcttaccgacgctgccatcaaaggcaaagtcgataagctgctcggc
ctgaaggaaaacgtcattatcgggaagctgattccggccggcaccggcatgaaccgttac
cgcagcctccagtttgaggaatctgagctggacgagacgagcgaggaaagccttgagcct
gtttccgttgaataa
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integrated database retrieval system
