Paenibacillus macerans: LMZ02_05735
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Entry
LMZ02_05735 CDS
T09394
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmae
Paenibacillus macerans
Pathway
pmae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LMZ02_05735 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_05735 (mfd)
Enzymes [BR:
pmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMZ02_05735 (mfd)
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LMZ02_05735 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
AAA_30
RecG_dom3_C
Efg1
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UMV48886
LinkDB
All DBs
Position
1252497..1256024
Genome browser
AA seq
1175 aa
AA seq
DB search
MLQALIEAFSRDTDFASMVAGVNSGMKEQLLSGLSGSTRQVMLAALHQEVKRPLLVVTHN
MFAAQKIYEDLQEALSPDEVLLYPANELVAAESAVSSPETLAQRIEVLLQCSRGFRGVVV
VPYSGIRRFIPTPETMAEAGLTITLGGTIQHGDFLNKMIELGYERVERVESRGEMSLRGG
IIDFYPLTSAMAYRVELFDDEVDSIRTFDPSDQRSVDQVKEVFVPPCKELIASPDRLEAA
AQAASERLDRQLEKMADRQAKNKLQEEIAKEIELLREHVYFPEIYKYISLIYPERKTLYN
YMPSDTLLILDEPARLLETAKQLERDESEWNLHLLQNGKSLPELPLAVETDHVLYHRPFQ
TLFLSLFLRQVPHSQPQNILNFVSRTMQDFHGQMNVLKAEMERWKKSGANVIMLASGEER
MDRMRRVLQDYGIEEPTLLKGNLQSGFELPSVHLVVITEGEMFSQKQRKVRRVASKSMDN
AERIKSYTELKVGDYVVHQNHGIGKYMGIGTLEVGGIHKDYMHIMYAGGDKLSVPIEQID
MIQKYVGSEDKEPKVYKLGGNEWQRVKNKVRSSVQDIADDLIKLYAERQAAPGYGFEKDS
PEQQEFEGMFPYEETPDQLRAIEEIKKDMEKNRPMDRLLCGDVGYGKTEVAIRAAFKAAI
EGKQVAVLVPTTILAQQHYETFRERFAGYPINIQTLSRFRSRKEQNETIKGLRQGTVDIV
IGTHRILSQDLVFKDLGLLIVDEEQRFGVTHKEKLKKLKTNVDVLTLTATPIPRTLHMSM
LGVRDLSVIETPPENRFPVQTYVVEYSQALVREAIEREMARGGQIYYLYNRVQGIHEMAA
QISALVPDARVGVGHGQMSEQELEKTILDFLDGEYDVLVSTSIIETGVDIPNVNTLIVHD
ADKMGLSQLYQLRGRVGRSNRIAYAYFTYQKDKSLTEVAEKRLQSIKEFTELGSGFKIAM
RDLAIRGAGNLLGAEQHGFIASVGFDLYSQMLAEEIQKRKVTMLGEAEPAETHWNTTIDL
GIDAYLPSDYIYDSMQKIEIYKKTASATSFEDVAELEDELLDRFGELPEAVQNLLSVARV
KLYGKKYGIESIALRGEEVTVKFYEGREQSIVPGRLAEIGNLFGRRVQFIQGSVMLIRIN
IKGMDDKALMGLLEQFLNALKDAFKAKGELQDVSK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgctacaagcgctaatagaagctttttcccgggataccgactttgcttcgatggtcgcc
ggcgtcaactccggtatgaaggagcaattgctctcggggttatccggttcgacgagacag
gtgatgctggccgcgctgcaccaggaggtgaagcgaccgctccttgtcgtaacccacaat
atgttcgccgcccaaaaaatttatgaagatttacaggaagcgctctcaccggacgaagtg
ctgctttatcccgccaacgagctggtcgccgccgaatcggccgtatccagcccggaaacg
ctggcccagcggatcgaggtgctgctgcaatgctcccgcggctttcggggcgttgtggtg
gtgccttattccggcatccgccggtttattcccacgccggaaacaatggcagaggccgga
cttacgattaccctcggagggacgattcagcatggcgacttcctgaacaaaatgatcgag
cttggctacgaacgtgtagaacgggttgaatcccgtggggaaatgagcctgcgcggagga
atcatcgacttttacccgctgacctcggcgatggcttaccgggtggaattgttcgatgac
gaagtcgattccatccgcaccttcgatccgtccgaccagcgttcggtggaccaggtcaag
gaagtgttcgttcccccttgcaaggaattgatcgcttccccggaccggctggaggcggcg
gctcaagccgcgtccgaacgcctggatcggcagcttgaaaaaatggccgaccgccaggcg
aaaaacaagctgcaggaggaaatcgccaaggagatcgagctgctgcgggagcatgtgtat
tttccggaaatctataaatatatttctttgatctaccctgaaagaaaaacgttgtataac
tatatgccgagcgacacgctgctcatcctggacgaaccggcgcgcctgctggagacggcc
aagcagctggagcgcgatgaatcggagtggaatctgcatttgctgcaaaacggcaaaagc
cttccggaactgccgctggcggtggagaccgaccatgtgctgtaccaccgtccgtttcaa
acgctgtttctgtccttgttcctgcgccaggttccgcactcccagccgcagaacattctc
aacttcgttagtcggacgatgcaggacttccatgggcaaatgaacgtgttgaaggcggaa
atggaacgctggaaaaaaagcggcgccaatgtcatcatgctggctagcggcgaggaacgc
atggaccggatgcggcgggtgctgcaggattacgggatcgaggagccgacactgctgaag
ggcaatctgcagtcgggctttgagctgccttccgtgcatctggttgtcatcaccgaaggg
gagatgttctcccagaagcagcgcaaagtgcgccgcgtcgccagcaaaagcatggacaac
gccgaacggatcaaaagctacaccgagctgaaggtcggcgattacgtcgttcaccaaaac
cacgggatcggcaaatatatggggatcggtacgctcgaggtcggcgggatccacaaagac
tacatgcatatcatgtatgccggcggcgacaagctgtccgttccgatcgaacagatcgac
atgattcagaaatacgtcggttccgaagacaaagagccaaaggtctacaagctcggcggc
aatgaatggcagcgggtgaaaaacaaggtccgctcctccgtgcaggatatcgccgacgat
ctgatcaagctgtatgccgagcggcaggcggcgccggggtatggcttcgagaaggactcg
ccggagcagcaggagttcgaaggaatgtttccttacgaggagacgccggaccaactgcgg
gccatcgaagaaatcaaaaaggacatggaaaaaaaccggccgatggaccgcctgctctgc
ggcgacgttggctacggaaaaacggaggtggcgatccgggccgctttcaaagcggcgatc
gaaggcaagcaggtcgcggtgctggtgccgaccacgattttggcgcagcagcattacgaa
acgttccgcgaacggtttgccggttacccgatcaatattcagacgctgagccggttccgc
agccgcaaggagcagaacgagacgatcaaggggctccgccagggcacggtggacatcgtg
atcgggacccatcggatattgtcccaggatctggtgttcaaagatttgggcttgctgatc
gtcgatgaagagcagcggtttggcgtaacgcataaagagaagctgaagaagctgaaaacg
aatgtggacgtgcttaccctgacggcgacgccgatcccgagaacgctgcatatgtcgatg
cttggcgtacgggatttgtcggtcatcgaaacgccgccggaaaaccgcttcccggtgcaa
acctacgtggtcgaatacagccaggcgctggtgcgcgaagcgatcgaacgcgaaatggcc
cggggcgggcaaatctactacctgtacaatcgcgtacagggaattcatgagatggcggcg
caaatctcggcgctcgtcccggatgcccgcgtaggcgttggccacgggcagatgtccgag
caggagctggagaagacgattctcgacttcctcgacggggaatacgacgtgctggtcagc
accagcattatcgagaccggcgtcgacattccgaacgtcaacacgctgatcgtgcacgat
gccgacaaaatgggcttgtcgcagctgtaccagctgcggggccgggttggccggtccaac
cggatcgcctatgcttacttcacctatcagaaggacaaatcgttgaccgaagtggccgaa
aagcgcctgcagtcgatcaaggagtttaccgagctcggctccggcttcaaaattgccatg
cgcgacctggccatccgcggcgcgggcaatttgctgggggcggagcagcacggcttcatc
gcctccgtcggctttgacctgtattcgcagatgctggccgaagaaatccagaaacgcaaa
gtgaccatgctcggagaagccgaacctgcggaaacgcattggaatacgacgatcgatctc
ggcatcgacgcttatctgccctcggattatatttacgatagcatgcaaaaaattgaaatt
tacaagaaaacggcttccgcaacctcgtttgaggacgtggcggagctggaggacgagctg
cttgaccgtttcggggaattgccggaagcggtgcagaacctgctgtccgtagccagggtg
aagttgtacggcaagaagtacggcatcgaatcgatcgcattgcgtggagaagaagttacc
gtcaagttctacgaaggccgggaacagtcgatcgtgcccggcaggctcgcggaaattgga
aatctcttcggaagacgtgtacaatttattcaagggtccgtgatgctgatccggatcaat
atcaaaggaatggacgacaaagcgttgatgggcttgttggagcaatttctgaatgccctg
aaggatgcgttcaaagcgaaaggggaactacaagatgtttcaaagtaa
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