Paenibacillus macerans: LMZ02_11955
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Entry
LMZ02_11955 CDS
T09394
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmae
Paenibacillus macerans
Pathway
pmae02020
Two-component system
pmae02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LMZ02_11955 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LMZ02_11955 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmae03021
]
LMZ02_11955 (rpoN)
Transcription machinery [BR:
pmae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LMZ02_11955 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_Crp_2
HTH_IclR
DNA_pol3_delta_C
MarR
DUF1382
Motif
Other DBs
NCBI-ProteinID:
UMV50015
LinkDB
All DBs
Position
complement(2729803..2731116)
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AA seq
437 aa
AA seq
DB search
MRTQIQNKQRQSVQLNVNPQMLQTFRLLAMPNGELERLISEKAQTNPFIEILPLRPNRRM
SAGLSRQIAAGLSTELLGYKLKAKTTSEEAIWEELKFSVDDPKVKKALQFLIGNLDEAGY
LPPDIDRHAEQAGISRAAFARALWLLQQEGAPGIGARSLQECLELQLIREGRKNSLAYIM
VHSYMEETARGDLPAIARETGAPLAEVAESLARIRKLQPRPGLVYEDAEPAPAVKDIAAS
VTMADGRLKIALNSLKISLYEETGYLESMKEACSIELRQKIEEAKALAQQLDYRHTALLK
VLTALVRKQRAFFQSGIHELKPLKLEQIAGSTGMHPSTVSRAIKDKWLDTPWGVFSFKYF
LAGGIEAESGDKLAAGAVKQMIRELIAGEDKRKPLTDQLISYLLQERGISISRRTVAKYR
TQAKIAPASQRKLNLHV
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
gtgcgtacccaaatccagaacaagcaacgccaatccgtgcaattgaacgtcaatccgcaa
atgctccagacgtttcggctgcttgcgatgccgaacggcgaattggaacgcctaatcagc
gaaaaggcgcagaccaatccgtttatcgaaatcctgccgctgcggccaaatagacgtatg
tccgccggcctatccaggcaaatcgctgcgggcttgtccactgaactgctgggctataag
ttgaaagcgaaaacaacgagtgaagaggcgatttgggaggagttaaaattcagcgtggat
gatcctaaggtgaaaaaagcgctgcaattcctgatcgggaatttggacgaagcggggtat
ttgccgccggacatcgaccgtcatgccgaacaggccggcatttcccgcgccgcgttcgcc
agggcgctttggctgctgcagcaggaaggcgcgcccgggatcggtgcccgttcattgcag
gagtgcctggaactgcagttgattcgcgaaggccggaaaaactccctggcctatataatg
gtgcacagctacatggaagaaacggcgcggggcgacctgccagccattgccagggaaacc
ggggctccgcttgcagaagtggcggaaagcctggcccgcatccgtaagctgcagccccgg
ccgggattggtttacgaggacgcagagcccgccccggcagtgaaggatatcgccgccagc
gtaacgatggccgacggacgcctgaaaatcgccttgaattcgctcaagatcagcctgtat
gaagaaactggctatctcgaaagcatgaaagaggcatgttccattgagttaaggcaaaag
atcgaggaggcgaaagcgctggcccaacagctggattaccggcatacagcgctgttaaaa
gtgctaaccgcgctagtgcggaagcagagggcttttttccaaagcggcatccatgaactc
aaaccgcttaagctggaacaaatcgccggcagcacgggaatgcacccgtccaccgtcagc
cgggcgatcaaagacaaatggctggatacaccttggggcgtgttcagcttcaaatatttt
ctggcggggggaattgaagctgagtccggggataagctcgccgccggcgcggtcaaacaa
atgatccgcgagttgatcgcgggcgaggataaaaggaaacctcttacggatcagctcatc
agctatctgcttcaagagcgggggatctccatctccagaagaaccgtcgccaaataccgg
acgcaagcgaaaatcgccccggcctcgcagcgtaaattgaacctccatgtataa
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