Paenibacillus macerans: LMZ02_12750
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Entry
LMZ02_12750 CDS
T09394
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmae
Paenibacillus macerans
Pathway
pmae03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LMZ02_12750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_12750
Enzymes [BR:
pmae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LMZ02_12750
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LMZ02_12750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UMV50159
LinkDB
All DBs
Position
2920970..2921917
Genome browser
AA seq
315 aa
AA seq
DB search
MDLKPVAPFEPIRSETIPQGENWVAQVKWDGVRMLTYRDGRETRLINRKGNDRTAQYPEF
IDVPSYCRASSVILDGEMIALSGGKPSFHEIMRRDSLRREREIRFASGRIQAIYMIFDIL
YYDGGWVTGRTLAERQQLLQEIVVPGDRVQLVPNTRDGQLLFNLMKERGWEGIVCKKLDS
PYLIGGKDGRWVKRKLARDLHAAIGGVTYRDGIVNAILLGLYDDEGRFLYIGHAGTGKWK
VREWRELTAKIPGLAVPERPFYNVPERIKGAVWIQPALTVKVQFLEWTPGGTMRHPIIQG
WGGVPAEECSVSQNM
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggatttaaaaccggtcgcgccgtttgaaccgattcgcagcgaaacgatcccgcagggg
gaaaactgggtggcccaggtcaaatgggacggcgtgcggatgctgacctaccgtgacggg
cgggagacgcgcctcatcaaccgcaaaggcaacgaccggacggcgcaatatccggaattc
atcgacgtcccctcgtactgccgggcgagctcggtcatccttgacggggagatgatcgct
ttatccgggggcaagccttcttttcatgagatcatgcggcgcgacagcctgcggcgggaa
cgggaaatccgctttgcgagcggacggattcaggccatttacatgatttttgatatttta
tattacgacggcggctgggtgaccggacgtacgctggccgaacgccagcagctgctgcag
gagatcgtcgttcccggcgaccgggtgcagcttgttcccaatacccgggatggacagctt
ctgtttaacctgatgaaagagcggggctgggaaggcatcgtctgcaaaaagcttgacagc
ccgtacctgatcggcggcaaggatggcagatgggtcaagcggaagctggcccgggatctg
catgcggcgatcggaggcgttacgtaccgggacggcatcgttaacgcgatattgctcggc
ttatatgacgacgaagggcggtttttgtacatcggacatgcggggacgggaaaatggaag
gttcgggagtggcgcgagctgaccgccaagattccggggctcgccgtgccggagcggccg
ttttacaacgtgcccgaacgcatcaaaggggccgtctggattcagccggccctgaccgta
aaagtgcaatttctggagtggacgcccggcggaacgatgcgccacccgatcatacaaggc
tgggggggcgtcccggcggaggaatgcagcgtttcgcaaaacatgtag
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integrated database retrieval system
