Paenibacillus macerans: LMZ02_22900
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Entry
LMZ02_22900 CDS
T09394
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
pmae
Paenibacillus macerans
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmae03019
]
LMZ02_22900 (hrpB)
Enzymes [BR:
pmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LMZ02_22900 (hrpB)
Messenger RNA biogenesis [BR:
pmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LMZ02_22900 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
HA2_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UMV46306
LinkDB
All DBs
Position
complement(5218107..5220761)
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AA seq
884 aa
AA seq
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MTKLPEPKPMPIDEAIPALKDSLRKAGAAVLLAEPGAGKTTRAPLALLSEPWLEGQSVIL
LEPRRLAARSAAVYMAAQLGERVGETVGYRMRGESRVSRKTRITVVTEGILTRLLQQDPA
LLGTGLIIFDEFHERSLHADLGLALALQSRELLRDDLRLLIMSATLDAEPVARLLGDAPV
VQSRGRMYPVETLYLPQAPAAKEPLETVAERAVRRALAAHDGSLLVFLPGAREIRRVESL
LAGSPLPEGVLLTPLYGALPQEAQRRAIEPAPAGRRKVVLATSIAESSLTVDGVTVVIDS
GLRRTTLFSPRTGMNRLVTVRAARDSADQRRGRAGRTAPGVCYRLWSEAEDRALPARTPP
EILEADLAPLALELAAWGAGSPDELAWLDAPPPAPYASAVLLLQQLGALDAAGRITGHGR
QMAALGLHPRLAHMLLRARELGLAEPACALAALLEERDLLKGAAGRDGDLRRRLALVLGA
AKGARGAGSALEADPAALQRVQQLRRQWEARLLELDQPANEAAAEGLAAPPGTLPPQAPP
AQAPPAQAPTAQPRADLDPQQPDRYCGLLVSFAYPDRIAMRRPDGRYLLRSGRGAVLLMK
ESLGAAAFLAIADVDDEGAEGRILLAAPLDETDLYRYYGKEIAEERSAAWDDASGAVRAR
IRQTFGAIVLKEQPDPQPGPEQITRALLDAVIVKGVGILPWTDRARMLQERLLFLHRLDE
RWPDVSDETLAATAESWLAPYLSGVRKRSDLQALSLYGILENLLDWPLRQVLNAEAPTHL
LVPSGSKIQVHYDGPQAPYAAVRLQEVFGMMETPRIGFGRVAITLHLLSPASRPVQVTAD
LRSFWETTYFEVKKDLKGRYPKHYWPDDPMEATATRKVRPDGQR
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagctgcctgaacctaaaccgatgccaatagatgaagcgattcccgcgttaaaa
gacagcctgcgtaaggcaggcgctgccgttctgctggccgagcccggagcggggaaaacg
acgcgcgcgccgttggcgctgttaagcgagccgtggctggaaggccagagcgttattttg
ctggaaccgcgccgtctcgcggcccgttccgccgccgtgtatatggccgcgcagctgggc
gaacgggtcggcgaaacggtgggctaccggatgcgcggggagagccgcgtgtcgcgcaaa
acgcggattaccgttgtgacggaagggattttgacccggctgctgcagcaggacccggcg
ctgctggggacgggactcatcatttttgacgaattccacgagcgcagcctgcacgccgat
ttggggctggcgctggcgctgcagagccgcgagctgctgcgcgatgatttgcggcttctg
atcatgtcggcgacgctggacgcggagccggtcgcccggctgctcggcgatgcgccggtc
gttcaaagccgcggccgcatgtatccggtggagacattataccttccgcaggcaccggcc
gcgaaagaaccgctcgaaaccgtggcggagcgggcggtgcgccgcgctttggcggcgcat
gacggcagcctgctcgtgtttttgcccggggcccgggagatccgccgcgtcgagtcgctg
cttgcgggatcgccgctgcccgagggcgtgctgctcacgccgctttatggggcgctaccg
caggaggcgcagcggcgggcgatcgagccggcgccggcgggccggcgcaaggtggtgctg
gccacgtcgatcgccgaatcgagcttgaccgtggacggcgtgacggtcgtcatcgacagc
ggcctccggcgcaccaccttgttttccccgcggaccgggatgaaccgtctggtgacggtc
cgcgccgcccgcgattccgccgaccagcggcggggccgcgccgggcgaaccgcgcccggc
gtatgctaccgcctctggagcgaggcggaagaccgcgcgctgcccgcgcgcacgccgccg
gagatcctcgaggcggacctggcgccgctcgcgttggagctggcggcgtggggcgccggc
tcgccggacgagctggcctggctcgacgcgccgccgccagcgccttacgccagcgccgtc
ctgctcctgcagcagctcggcgcgctggatgcggccggccgcatcaccgggcacggccgg
cagatggccgcgctcgggctgcacccgcggctggcgcatatgctgctgcgggcgcgcgag
ctaggcctggccgagccggcctgcgccctggccgcgctgctcgaagagcgcgacctgctc
aaaggcgccgccggccgggacggcgacctgcgccgccggctcgcgctggtgctgggcgcg
gccaagggggcgcgcggggccggctcggcgctcgaggcggacccggccgccctgcagcgc
gtccagcagctccgtcgccaatgggaggcgcggctgctggagctggatcagccggccaac
gaagctgccgctgaaggcttggccgcgccgcccgggacgcttccgccccaagcgccgcca
gcccaagcgccgccggcccaggcgcccacggctcagccgcgcgccgatcttgacccgcag
cagccggaccggtattgcggcctgctggtctccttcgcttacccggaccgcatcgccatg
cgccgcccggacgggcggtatttgctgcgaagcgggcgcggcgcggttttgctgatgaaa
gagtccctcggggccgcggcttttctggccatcgccgatgtcgacgacgagggggcggaa
gggcggattcttttggctgctccgctcgacgaaacggacctgtatcgttattacggcaaa
gagattgccgaggagcgcagcgcggcttgggacgacgcttccggtgcggtgcgagcccga
atccgccaaacgttcggcgcgatcgtcctgaaggagcagccggatccgcaaccgggtccc
gagcagattacccgcgccctgttggatgcagttatcgtcaagggcgtgggcatcctgccg
tggacggacagggcgcgaatgctgcaagagcggctgctgttcttgcaccgcttggatgag
cgatggccggacgtttctgacgagacgctggcggcgacggcagaatcgtggctggctccg
tatttgtccggcgtgcgcaagcgttccgatttgcaagctttatcgttgtacggcatcctg
gagaacctgttggactggccgttgcggcaagtgctgaacgccgaggcgccaacgcacttg
ctagtcccgagcggctccaaaatccaagttcactacgatgggccacaggccccgtatgct
gcagtacgcctgcaggaggtattcgggatgatggagaccccgcgaatcggcttcggccgg
gtggcgatcaccctgcatctgctgtcgccagcaagtcggccggttcaggtgaccgcggat
ttgcgcagcttttgggagacgacctatttcgaggtcaaaaaagacctcaaaggccgttac
cccaagcattattggccggatgatcccatggaggcgacggctacccgcaaggtgcgtccg
gacgggcaacgatag
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