Paenibacillus macerans: LMZ02_23575
Help
Entry
LMZ02_23575 CDS
T09394
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmae
Paenibacillus macerans
Brite
KEGG Orthology (KO) [BR:
pmae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmae03032
]
LMZ02_23575 (topA)
03400 DNA repair and recombination proteins [BR:
pmae03400
]
LMZ02_23575 (topA)
Enzymes [BR:
pmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LMZ02_23575 (topA)
DNA replication proteins [BR:
pmae03032
]
Prokaryotic type
DNA Topoisomerases
LMZ02_23575 (topA)
DNA repair and recombination proteins [BR:
pmae03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LMZ02_23575 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
DUF7340
Lar_restr_allev
Toprim_2
Zn_ribbon_8
DUF7573
Motif
Other DBs
NCBI-ProteinID:
UMV46431
LinkDB
All DBs
Position
complement(5364666..5366768)
Genome browser
AA seq
700 aa
AA seq
DB search
MADSLVIVESPAKAKTIGKYLGSKYIVKASMGHVRDLPKSQIGVEVENDFSPKYITIRGK
GSVLKELKDASKKVKKIYLAADPDREGEAIAWHLAHVLDVDEKETCRVVFNEITKQAVKD
AFKSPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EISAFVPEEYWSITARLKTGESSFEAKFHQLRGEKLELKSEQQVKEILQSIEKAKFSVAE
VKEKERLRHPAAPFTTSSLQQEAARKLNFRAAKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKEYILGKYGKDYVPESPRQYSKKAAGAQDAHEAIRPTSAMRDPESV
KEFTSRDQYRLYKLIWDRFMASQMSSAVLDTLSVDIAAGEATFRAVGSKIRFPGFMKVYV
EGNDDGSANDDDKFLPPLAQGDKLITEEIEPKQHFTQPPPRYTEARLVKTLEELGIGRPS
TYAPTLETIQKRGYVAIEEKKFVPTELGELVIEQMEQFFPEILDVEFTAHMEEDLDHVEE
GAEDWVRVLSEFYESFEKRLSVAEEEMKEIEIEDEVSDELCEKCGKPMVYKLGRFGKFLA
CSGFPDCRNTKPIVKDIGVTCPKCKEGHVVERRSKKGRIFYGCDRYPECDFVSWDKPSPK
PCPKCGSLLVEKRNKQGGKLQCTSCDYVEAIEENDDGADE
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtggcggattcactcgtcatcgtggaatcgcctgccaaggcgaaaacgattggcaaatac
ctaggcagcaaatacatcgtgaaagcctcaatgggccatgttcgcgatttacccaaaagc
caaattggggttgaagttgagaacgacttcagtccgaagtatattacgatccgtgggaag
ggttccgtattaaaagaattgaaggatgccagtaaaaaggtcaaaaaaatctatctggca
gccgaccctgatcgcgaaggagaagcgatagcctggcatttggcccatgttttggacgtg
gatgaaaaagaaacgtgccgcgtcgtatttaatgagattacgaagcaggccgtgaaggat
gcgtttaaaagcccgcgcaaaatcaatatggatttggtaaacgcgcagcaggccagacgc
attctggaccggctcgtcggttacaagatcagcccgctgctgtggaaaaaggtcaaaaag
ggtttgtcggccggccgtgttcagtcggttgccgtcaagatcattttggaccgggaaaac
gaaatttccgcgtttgtgcccgaagaatactggagcattacggcgaggctaaaaaccgga
gagtcttcgtttgaagcgaagtttcatcaactccgcggcgaaaagcttgagctgaagagc
gagcagcaggttaaggagattttacaatccatcgaaaaagctaaattcagcgttgccgaa
gtcaaggagaaggaacgtctgcgccatcccgccgctccgtttacgacaagctccctgcag
caggaagcggcccgcaagctgaatttccgcgccgccaaaacgatgtccgtcgcccaacag
ctgtatgagggcgttgacctcgggaaagaaggcaccgtcggcctcattacctacatgcgt
accgactcgacccggattgccgcgtcggcgcaggaggaagcgaaggaatatatcctgggc
aagtacggcaaagactacgttcccgaatcgccgcgccagtattcgaagaaggcggccggc
gctcaggatgcccacgaagcgatccgcccgacgtcggcaatgcgcgaccccgaatcggtc
aaggaattcaccagccgggaccagtatcggctgtataagctgatttgggaccgctttatg
gccagccaaatgtcttcggccgtactggatacgctgtccgtcgatatcgctgccggcgaa
gcaacgttccgcgccgtcgggtcgaaaatccgctttccgggatttatgaaggtatatgtg
gagggcaacgacgacggaagcgccaacgacgatgacaagtttttgccgccgctggcacaa
ggggataagctgatcacggaagagatcgagccgaagcagcacttcacccagccgccacca
cggtatacggaggcccgcctcgtcaaaacgctggaggaactgggcattggacgcccaagc
acctatgcgccgaccctggagacgattcaaaaacgcggatacgtcgcgattgaggagaag
aagtttgtgccgaccgagctgggcgagctggtcatcgagcaaatggagcaatttttcccg
gaaatcctcgatgtggagtttacggcccatatggaggaagatcttgaccatgtggaagag
ggcgccgaggattgggtccgggtgctcagcgagttctacgaatcgtttgagaagcggctt
agcgtggccgaggaagaaatgaaggaaatcgagatcgaagacgaggtttccgatgagctt
tgcgaaaaatgcggcaaaccgatggtgtataagctggggcggttcggcaagtttctcgct
tgctcggggttcccggattgccggaacacgaagccgatcgtcaaggatatcggcgttact
tgcccgaaatgcaaggaaggccatgtggtagaacggcgcagcaagaaagggcggattttt
tacggctgcgatcgttatccggagtgcgatttcgtatcctgggataagccgtcgcccaag
ccctgcccgaaatgcggctcgctgctcgtggaaaagcggaacaagcagggcggcaagctg
cagtgcacttcctgcgattacgtggaggccatcgaggaaaacgacgacggggccgacgaa
taa
DBGET
integrated database retrieval system
