Paraperibacillus marinus: V1498_06460
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Entry
V1498_06460 CDS
T11218
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pmaf Paraperibacillus marinus
Brite
KEGG Orthology (KO) [BR:
pmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaf03019
]
V1498_06460
03009 Ribosome biogenesis [BR:
pmaf03009
]
V1498_06460
Enzymes [BR:
pmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V1498_06460
Messenger RNA biogenesis [BR:
pmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1498_06460
Ribosome biogenesis [BR:
pmaf03009
]
Prokaryotic type
rRNA helicases
V1498_06460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
REV
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XNZ81608
LinkDB
All DBs
Position
1292265..1293578
Genome browser
AA seq
437 aa
AA seq
DB search
MEKNNFERFGFQNYIIDAVKDLGFDKPTEIQERVIPAINNGWSMIGQSQTGTGKTHAYLL
PIMDKLDPRKEEVQAVISAPTRELANQIYLEAQKIAEHFPEETPLSVKLFIGGTDKQRTI
EKLKRQPQLIIGTPGRIKDLVNENALNMYTAGLLVVDEADLMLDMGFIEDVDQFAAKMAE
KTQMLVFSATIPEKLMPFLKKYMENPKYVQVSPEQATARKIEHVLIPLRHRNKYSLLHDV
LTAYNPYLAIIFTNTKKKAEEVAYALNNKGLKVGRIHGDLTPRERKKMMKQINDLEFQYI
VATDLAARGIDIKGISHVINFELPSDLDFYIHRTGRTARAEFSGIAATIYEPSDEDALNR
LEKLGIEFKNVDLQNGEWTETEDRNKRKKRKRQPDEINDTAKRLIQKPSKVKPGYKKKMQ
YEIENFKKRQRRLKKKK
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaaacaattttgaaagatttggctttcaaaactacataatagacgctgtaaaa
gacctgggctttgataagccgacggaaattcaggagcgggtaatcccggcaatcaataat
ggctggagcatgattgggcagtcccagacaggtacagggaaaacacatgcctacctcctg
cctatcatggataagcttgatccacgtaaagaagaggttcaggcagtcatctcagcgcca
acaagggagcttgcgaaccagatttacctggaggcacagaagatcgcggaacacttccct
gaggagacaccgctttcggtcaaactgttcatcgggggaactgacaagcagaggaccatt
gaaaagcttaaaaggcagcctcagcttatcatcggaacaccaggacggatcaaggacctt
gtgaacgaaaatgccctgaatatgtatacagccggcctgctggttgtggatgaagccgat
ttgatgctggatatgggcttcattgaggatgtagatcaatttgctgccaagatggcggag
aaaacgcagatgctggtcttctccgccaccattcctgaaaagctcatgcctttcctaaag
aaatacatggaaaatccgaagtatgtacaggtgtcaccggaacaggcaaccgcgaggaaa
attgagcatgtacttattccgctcaggcatcggaataagtacagccttctgcatgatgtg
cttactgcctataatccttatctggccatcatctttaccaacacgaagaaaaaggccgag
gaagttgcctatgctctaaataataaagggctgaaagtaggcaggatccatggagacctg
acaccgagagagcgcaagaaaatgatgaaacagatcaatgatcttgagtttcaatatatc
gtggctacagatttggcggcccggggaattgacatcaaaggaatcagccatgtgattaat
tttgagctgccgagtgatctggacttctatatccaccggacaggaaggaccgcccgtgct
gagttttccggcatagcggctacgatttacgaaccatctgatgaagatgccctgaacagg
ctggagaagctgggcattgaattcaaaaatgtcgatctccaaaatggagagtggacggag
accgaggaccggaacaagcgaaaaaaacgcaaacggcagccggatgaaatcaatgacaca
gcgaagcgcctgattcagaagccgtccaaggttaaaccaggctacaaaaagaagatgcaa
tatgaaatagaaaacttcaaaaagcgccagaggcgccttaagaaaaagaaatag
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