Paraperibacillus marinus: V1498_09040
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Entry
V1498_09040 CDS
T11218
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pmaf Paraperibacillus marinus
Pathway
pmaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmaf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
V1498_09040
09124 Replication and repair
03420 Nucleotide excision repair
V1498_09040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmaf03021
]
V1498_09040
03036 Chromosome and associated proteins [BR:
pmaf03036
]
V1498_09040
03400 DNA repair and recombination proteins [BR:
pmaf03400
]
V1498_09040
Enzymes [BR:
pmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
V1498_09040
Transcription machinery [BR:
pmaf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
V1498_09040
Chromosome and associated proteins [BR:
pmaf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
V1498_09040
DNA repair and recombination proteins [BR:
pmaf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
V1498_09040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
PDDEXK_1
AAA
PhoH
Motif
Other DBs
NCBI-ProteinID:
XNZ82081
LinkDB
All DBs
Position
1781203..1783506
Genome browser
AA seq
767 aa
AA seq
DB search
MEEIKVSVRPLVEYVYRAGSIEKGFGSQASMTEGTLAHQKVQKGYKDGDQKELPLMAVLE
AEGIRFRIEGRCDGILAAEEGVVIDEIKSTKKDLNEIDEGGYPVHWAQAKCYAYMYALAN
ELSGLTVQLTYVHLQTQEIIRYRRKYTALELERWMQGLLADYVPYARLRLKLLKEREISI
AALPFPYESYRRGQRHFAGAVYKTITDQASLFASAPTGIGKTISALFPSLKAMGEGRIKK
IFYLTAKTITRQVAEDALLVMEQKGLKVNSVTITAKDKICFQDNLSCSRESCVYCEGYYD
RINGAVMDILSIETIMTREIIEKYAKKHRVCPFEFSLDLAYTADIVICDYNYIFDPKVSL
KRLWDDAKKESVLLIDEAHNLVDRSRSMFSAEIVKSLYLALKREYKGASPGVFKASKKVN
DFFIGERKKIPDSNYLVQDELPREIVEVLEEFCDAAEEELLAAGPSSQPELLLEAYFSAN
DFIKISKLFNDDYACMYIKENQDFSIKLLCLDASGLLGKAGNSYGSKIFFSATLQPVQFY
KDMLGAKPEDYTLILPSPFEAHQTQVFIYPVSTRYHDRQKSHHPIAGMIKKALLAKQGNY
LVFFPSYRYMQDVFLALEEIGHDANLIIQKTQMTEREREEFLASFKAGTAGVHAGFAVLG
GIFSEGVDLIGDRLNGVMVVGVGLPQIGFERNVIKEHFTESGRNGYDYAYVFPGMNKILQ
AAGRLIRSESDSGTIILADDRYLTQKYQAMLPPEWRDYTILKAKFED
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaattaaagtttcagtcaggccattggtcgaatacgtataccgggcaggaagc
attgaaaagggtttcggatcgcaggcatcgatgaccgagggaacccttgcccatcaaaag
gtacaaaaaggctacaaagatggggaccaaaaggaattgccgctcatggctgtattggaa
gcggaaggcatccgattcaggattgaagggcgctgtgacggaatcctcgcggcagaagag
ggtgtcgtgattgatgaaataaaatcaactaaaaaagatttgaacgaaatagatgaagga
gggtaccctgttcattgggcacaggcaaaatgctatgcctatatgtatgcacttgcaaat
gagctatctggcctgaccgtccagcttacttatgtccatcttcaaacccaggaaatcatc
agatatagaaggaagtataccgctttggagctcgagcgctggatgcaagggctgctggct
gattatgttccatatgccagattgaggctgaaactgctaaaagagagagaaatcagcata
gcggcgcttccattcccttacgagtcctaccggagggggcaaaggcattttgccggagcg
gtttataagacaattactgatcaagccagcctttttgccagtgctcctacaggaatagga
aaaaccatctccgccctgttcccatcattaaaggcaatgggggagggcaggataaagaaa
atattttatctgactgcaaagaccattaccaggcaggtggccgaggatgcattattggtc
atggagcagaagggcctcaaagtgaactcggtgaccattactgcaaaagataagatatgc
ttccaggataatctttcatgttcacgggaaagctgtgtatattgtgagggctattacgac
cggataaatggagcggtcatggacatcttatcaattgaaaccatcatgacccgtgaaatc
atagagaaatatgcgaagaaacatagagtctgcccttttgaattctccctggatcttgct
tatacggccgatattgttatctgcgattataattatatatttgatccgaaagtatcgctt
aagaggctctgggatgatgcgaaaaaggagagtgtgcttctgattgatgaagcacataac
cttgtagatcggtcccgatccatgttttcggcagaaatagtgaaatcgctttacctggct
ttaaagcgggagtataaaggcgcgagtccgggagtatttaaggcatctaaaaaagtaaac
gatttctttatcggggaaaggaaaaaaattccggattctaattacttagtgcaggacgaa
ttgccccgggaaattgtggaggtgctggaggagttttgtgatgcggcagaagaagagctg
cttgctgccggcccttcttcgcagccggaattgcttctggaggcttatttcagcgccaat
gattttataaaaatctccaaattattcaatgatgactatgcttgtatgtatataaaggaa
aatcaggacttctccatcaaattactgtgtctggatgcctctggattattaggaaaggcg
ggaaactcatatggttctaaaatcttcttctcggcaactctccagcctgtccagttctac
aaagacatgcttggtgcgaaaccagaagattacaccctgattcttccgagtccttttgag
gcacatcagacccaggtattcatttacccagtatcaacacgatatcatgacaggcaaaaa
agccatcatcctattgccggcatgatcaaaaaagctctcctggctaagcagggcaactat
cttgtcttttttccttcatacagatatatgcaggatgttttccttgccctggaggaaatc
ggacacgatgccaatctgatcattcaaaaaacacagatgacggaacgggagagggaagaa
ttccttgcttcttttaaggcagggacagctggtgttcatgcaggttttgcagttcttggc
ggcatcttttcggaaggagtcgatcttataggcgaccgcctgaatggtgtgatggttgta
ggagtgggactcccccaaatcggtttcgaaagaaatgtcattaaagaacattttactgaa
tcaggcaggaatggctacgattatgcctatgttttccctggtatgaacaagattctccag
gcggctggccgcctgatacggtcagagtcggacagcgggaccatcatcttagcggatgac
cgttaccttacacagaagtatcaggccatgctgcctccggaatggcgggattacaccatc
ctaaaagcaaaatttgaggattag
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