Paraperibacillus marinus: V1498_14045
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Entry
V1498_14045 CDS
T11218
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmaf Paraperibacillus marinus
Pathway
pmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1498_14045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmaf03019
]
V1498_14045
Messenger RNA biogenesis [BR:
pmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V1498_14045
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_6
SPO1_gp41
Motif
Other DBs
NCBI-ProteinID:
XNZ78994
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Position
complement(2788722..2790380)
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AA seq
552 aa
AA seq
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MKKQNNIRIIVLGGQGESGKNMYVAEVNEDLYILDAGLMYPENEMLGIDVVIPDIAFLAE
NKSRIQGIFLTHGHEDHIGALPYILRTLNVPVYATRLTIELAKANLRENDYKGKVKFERI
DSDTSLSFPSAEVTFFKTNHSIPDSVGIAIHTSEGAIVYTGDFKFDQAAAPLYQPEIGKM
AALGEKGVLALLSVSTGAEKPGYTPSEALAARGMSDVFYNAKKRIIVACFASHINRIQHV
FNAAHENGRKVAVVGKSLQRVYDIALGNGYLNVPDDIIIPVSEIGSYPEEKVVVLVTGIQ
GEPIEALQKMAKRSHKQVNIQQGDTVLIAAPPIKGGELFVSKTMDMAYRAGAEVISGKTV
NVPGHGSQEELKMMLNLMKPKFLLPVHGEFRNLKAHARLAAGWGLPGDRILILDKGETAE
IKGDSVSTSGRVTAGNVLIDGSGVGDVGNIVLRDRRLLSQDGILIVVISLNKSRKVISAG
PEIISRGFVYVRESEKLMEDASNLVKTIVQKKIAGDSFDWASLKQEMRDGLNSFLYEKTK
RRPMILPIIMEG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaaacaaaataatataagaataatagttttaggcggccagggagaatcaggcaag
aatatgtatgtggccgaggttaatgaggatttatacatattggatgctggccttatgtat
ccggaaaatgaaatgcttggaattgatgtggtcatacctgacatagcgtttctggctgag
aacaaaagcagaatacagggtatctttttaacccatggccatgaagatcatataggggct
ctgccttatatcctgagaactctgaatgtgccggtttatgcgaccaggctgaccattgag
cttgcgaaggcaaatctccgcgagaatgattacaagggaaaggtgaagtttgagcgtatc
gattcagatacttcactttctttcccatctgcagaggtcaccttctttaaaacaaatcac
agcatccctgattcagtggggatcgccatacatacatctgaaggggccatcgtatatacg
ggtgatttcaagtttgaccaggccgccgctccgctctatcagccggaaatcggcaagatg
gccgcccttggtgaaaaaggcgtgctggccctcctatcggtcagcaccggagctgagaaa
ccgggctatactccttctgaagccctggcggcaagagggatgtccgatgtgttttacaat
gccaagaagcgaatcatcgtagcctgctttgcttcccatatcaacagaattcagcatgta
ttcaatgcagcccatgaaaacggcaggaaagtcgcagtggtagggaaaagcctgcagcgc
gtctatgatattgccttgggcaatgggtacctgaatgtgccggatgatattattattccc
gtctcggagattggaagttatccggaagagaaagtagtcgtgcttgttaccgggattcag
ggagagccgattgaagccctccagaagatggcaaagagatctcataagcaagtgaacatc
cagcagggcgatacagttctgattgcagcacctccaatcaaagggggcgagctctttgtt
tcaaagacgatggatatggcttaccgggcaggtgcggaggttatttccggaaagacggtg
aatgtaccgggacacggcagccaggaagagctgaaaatgatgcttaacctgatgaaaccg
aagttccttcttcctgttcatggggaattcaggaacctgaaggcccatgccaggcttgca
gctggatggggccttcccggcgaccggattctgattttagataaaggtgagactgcagag
ataaaaggggattccgtcagcacctcaggcagggtgactgcaggcaatgtcctgatagat
ggaagcggcgtgggcgatgtaggaaatatagtcctccgtgaccgcagactgctctcgcag
gatggcatcctgattgttgtcatcagtttgaataaatcgaggaaggttatttcagccggg
cctgaaatcatttcccgcggttttgtgtatgttcgtgaatcggagaaactgatggaagac
gcctctaaccttgtcaagacgatcgtccagaaaaaaatcgcaggagattccttcgattgg
gccagccttaagcaggaaatgagagacggtctgaattcattcctatatgaaaaaacaaaa
cggaggccaatgatccttcccatcatcatggaagggtaa
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