Paraperibacillus marinus: V1498_14400
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Entry
V1498_14400 CDS
T11218
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmaf Paraperibacillus marinus
Brite
KEGG Orthology (KO) [BR:
pmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmaf03032
]
V1498_14400 (topA)
03400 DNA repair and recombination proteins [BR:
pmaf03400
]
V1498_14400 (topA)
Enzymes [BR:
pmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
V1498_14400 (topA)
DNA replication proteins [BR:
pmaf03032
]
Prokaryotic type
DNA Topoisomerases
V1498_14400 (topA)
DNA repair and recombination proteins [BR:
pmaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
V1498_14400 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
XNZ79060
LinkDB
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Position
complement(2859191..2861266)
Genome browser
AA seq
691 aa
AA seq
DB search
MSDYLVIVESPAKAKTIEKYLGKKYKVKASMGHVRDLPRSQMGVDVENEFNPKYITIRGK
GPVLKDLKTAAKKAKKIYLAADPDREGEAIAWHLAHTLDVDTSSDCRVVFNEITKDAIKE
SFKHPRPIDMDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVAVRLIIDREK
EIQKFIPEEYWTIKAEFMKGKDLFEASFFSLDGKKVQLTNEEEVNAVLSRLKGHEFQVSN
VTKKERKRNAAAPFTTSSLQQEAARKLNFRAKKTMMIAQQLYEGIEIGKEGTAGLITYMR
TDSTRISDTAKNEAREFISGQYGAEYAVAEERKDKKQTNAQDAHEAIRPTSALRDPASVK
DYLSRDQYRLYKLVWERFVASQMAPAILDTMSVDLENSGVLFRATGSKIKFAGFMKVYVE
GTDDSEEEKENFLPVLEEGDRAKAGDMDKKQHFTQPPPRYTEARLVRTLEELGIGRPSTF
APTLDTIQKRGYVALDNKRFIPTELGEIVLDLILEFFPDILDVDFTAKMERDLDDIEDGK
IAWVRVIDDFYKDFEGHLEKAEAEMEKVEIKDEPAGEDCENCGSPMVFKMGRYGKFMACS
NFPDCRNTKAIVKEIGVKCPNCHEGNIIERKSKKKRIFYGCDRYPECEFISWDKPLARKC
PKCDNFLVEKKLKKGIQVQCVNCDYKEEPQS
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattacctggtaatagtggaatcgccggcaaaggcgaagacgattgaaaaatat
ttaggaaaaaaatataaggtcaaagcttccatggggcatgtgagagatttgcccaggagc
cagatgggagtagacgttgaaaacgaattcaatccaaagtatataaccattagaggaaaa
ggccctgtattaaaagatctgaaaacagccgctaaaaaggcaaagaaaatttatctggcg
gctgaccccgacagggaaggggaagcaattgcctggcatctggcgcatactctggatgtc
gatacctcatccgactgcagagtggttttcaatgaaatcacaaaagacgccattaaagaa
tccttcaagcatccaaggccgatcgatatggaccttgtggatgcacagcaggcaaggagg
attctggaccgtctcgttggatataacatcagtccgctcctgtggaaaaaagtcaagaaa
ggcttgagcgcagggcgggtccaatcggtcgcggtccgcttgatcatcgaccgtgaaaaa
gagatacaaaaattcataccagaagaatattggacaatcaaagctgagttcatgaaaggc
aaggacctgttcgaagcatcattcttcagcttggatggtaaaaaagtgcagctgactaat
gaagaagaagtcaatgcggtattatccagattgaagggccatgagttccaggtgtccaat
gtcaccaagaaagagcgcaaaagaaatgctgctgccccatttacgacatcctcgctccag
caggaggcagccaggaagcttaatttcagggcgaaaaagacaatgatgattgcccagcag
ctttacgaaggaatcgagatcggcaaagaagggaccgccggactcatcacttatatgaga
actgactcaacaaggatttccgacacagcgaaaaatgaagccagggaattcatttccggg
caatatggcgccgaatatgccgttgccgaagaaagaaaggacaaaaagcaaaccaatgca
caggatgcccatgaagcaatccggccaacaagcgccttaagggatcctgcttccgtcaaa
gactatctttcaagggatcaatacagattgtataagctggtctgggagcgcttcgtcgca
agccagatggcccctgccattctggatacaatgagcgtggaccttgaaaattctggtgtg
ctgttcagggcgaccggatcaaaaatcaagttcgccgggtttatgaaggtgtatgtagaa
ggaacggacgattcagaagaagaaaaggaaaacttcctgcctgtacttgaagaaggcgac
cgcgcgaaagcaggggatatggataagaaacagcattttacccagccgccgccgcgatat
acagaagcacggctcgtaaggacactggaggagctcgggatagggcggccttccaccttt
gcaccgacacttgatactattcagaagcgcggctacgtcgcacttgataataaaaggttc
atcccaaccgagcttggtgaaatcgtactggatctcatccttgaattcttccctgatatt
cttgatgttgatttcacagcaaagatggagagggacctggatgacatcgaggacggaaag
attgcctgggttcgtgtcatcgacgatttctataaagacttcgaaggacatcttgaaaaa
gcagaagcagagatggagaaagtcgaaataaaagatgaacctgcaggcgaggattgtgag
aattgcggaagtcccatggtttttaaaatgggacgttacggcaagtttatggcctgctcc
aattttcctgactgccgcaataccaaagccattgtcaaggagattggcgttaagtgcccg
aactgccatgaaggtaatatcatcgaaagaaaaagcaagaagaaacggatcttctacggc
tgtgatcgatatcctgaatgtgagtttatttcatgggataagccgcttgcgcggaaatgt
ccgaaatgcgacaatttcctggtggaaaagaagcttaaaaagggcattcaggttcaatgt
gtgaactgcgattacaaagaagagccgcaaagctag
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