Paraperibacillus marinus: V1498_16215
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Entry
V1498_16215 CDS
T11218
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
pmaf Paraperibacillus marinus
Pathway
pmaf03420
Nucleotide excision repair
pmaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V1498_16215
03430 Mismatch repair
V1498_16215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmaf03400
]
V1498_16215
Enzymes [BR:
pmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1498_16215
DNA repair and recombination proteins [BR:
pmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V1498_16215
MMR (mismatch excision repair)
Other MMR factors
V1498_16215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
XNZ79406
LinkDB
All DBs
Position
3211720..3213969
Genome browser
AA seq
749 aa
AA seq
DB search
MKKAMKSERLFNLDTVDPSELQALYDDGKRGHLSCSVCREAVKLYLGIENEPHFFHSSNR
LDCMEAGSGARVAELAATLHDGFRLPRSRGITTGAEPAAAWKQAVRVKENPAFRSTLQSV
ESSEDPIQLDIQQKEAVTAVDGPVLVLSGAGSGKTRVLTARTAYMISSHGIDPGGIMLVT
FTAKASREMKERLLSFPGLSRRDVNSLICGTFHSIFYRILIHHEPGKWTKEALLKWEWEK
VQIVKAAGRERDLDEKVFAYDQALQQIGLWKNSLMFPENIRAGDDWEEKCLFLYRKYEEY
KVNHQKYDFDDMLLGCYLLLESNPGILEKYQNRFTHFLIDEFQDINKVQYELIRLLAGQS
QNICAVGDDDQSIYSFRGSDPAFISAFEHDFEGTKVIKLTNNYRSAHEIVGTANRIIRLN
SNRREKSMNAQHDDGPPPMLFFPYDEEQEATMIVTDLKEKIAAGRNPGEFAILYRTHSMS
RAIFERLSQSSLPFAIDQDADSFYDRRTVRSMLSYLRLSLDPESTEAIADLMPSLFLKQN
VLRQIKADSILNDCSLLKALSYVKTSFAFQEKKLKKLPQQIGSLKNLSPVQALEAVEKEL
GFQDFIKKRGNEGNSMERGSDDVRDLKVAARRFRTIAEFLDHAEHMKAMNSEVKKLSKHF
SQAIQLTTIHRSKGLEYGTVYVIGNVDGGLPHDYALDSYRKGETGPLEEERRLLYVAATR
ARNELYLSIPHTRRGRAASPSRFLRMLKK
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagcgatgaaaagtgaacgtttattcaatttagatacagtagatccttccgaa
ctgcaggctttatatgatgatggaaaacgcggtcatctttcctgctctgtctgcagagaa
gcagtaaagctatatttggggatcgaaaacgaaccgcatttctttcattcatccaatagg
ttggactgcatggaagcgggatccggggccagggttgcagaactggctgccaccctccat
gacggttttcggcttcccagatcccgcggaataacgactggagctgaaccggcagcggca
tggaaacaggcggtccgtgtaaaggaaaaccccgctttccgttctactctgcaatcagta
gaatcctcagaggatccaatacagcttgatattcagcaaaaagaggctgtgacggcagta
gatggtccggttctggtcctctcaggagcaggcagcggaaaaaccagggtactgactgca
cgaacggcctatatgatttcaagccacggcatagatccggggggaatcatgctggtaacc
ttcactgctaaagcctccagggaaatgaaggaaaggctgctctcattccccgggctttca
cgccgggatgtgaattcactcatctgcggcaccttccatagtatcttctaccggattctt
atccaccacgaacccggcaagtggacaaaagaagctttacttaaatgggaatgggaaaaa
gtgcagattgtgaaggcagccgggagagaacgggacctggatgaaaaagtgtttgcctat
gatcaggctcttcagcagattggactctggaaaaactccctgatgtttccggaaaacatc
agggcgggggatgattgggaggaaaagtgcttattcctttaccgaaaatatgaagaatat
aaagtaaatcatcaaaaatatgatttcgatgatatgcttctcggctgttatcttcttttg
gagtcaaatcccggaattcttgaaaaataccagaatcggttcactcactttctgatagat
gaattccaggacatcaataaggtccaatatgaattaatccgcctgctggccggacaatcc
caaaacatatgcgcggtgggagatgatgatcagagcatctattccttcaggggaagcgat
cctgctttcatcagtgcatttgaacatgactttgaaggaaccaaggttataaaactgacc
aataattaccgatctgcccatgaaattgtgggaacggcaaaccgcatcatcaggcttaat
tccaaccggcgtgaaaaatcgatgaatgcccagcatgatgatggccctccgcccatgctt
ttctttccctatgatgaagaacaggaagcgaccatgatcgtgacagatctgaaggaaaaa
attgcagcaggacggaacccgggggaatttgccatcctataccggacccactccatgtcc
cgggctattttcgaacggctgagccagagcagcctgccttttgccatcgaccaggatgca
gattctttctatgacaggagaacggtccggagcatgctttcctacctgaggctgagcctt
gatcccgaaagcacagaggctatcgcagatctaatgccttccctcttcctgaaacaaaac
gtgctcaggcagataaaggcggactccattttaaacgactgttcacttctgaaggcactt
tcttatgtaaagaccagctttgcctttcaggaaaaaaagctgaagaagctgccgcagcaa
attggatctctgaagaacctctcacctgtccaggcgcttgaagctgttgagaaagagctg
ggttttcaggatttcattaaaaaacgcggaaatgaaggcaattccatggaaagaggttcg
gatgatgtccgggatttaaaagtggctgcacgccgattcaggacaattgcagaattcctg
gaccatgcagaacatatgaaggcaatgaactctgaagtaaagaagctgtccaaacatttc
agccaggctatccagctaacgaccatccaccggtcaaaagggcttgaatatgggaccgtc
tatgtaatcggcaatgtggacggcggcctgccgcatgattatgccctggactcctatcgc
aagggtgaaaccggtccgctggaagaggaacgaaggctgctgtatgtagccgctacacgg
gctaggaatgaactttacctttccattccccatacacgcaggggaagggcagcgtctcct
tcaagattcctgcgcatgctgaagaaataa
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