Providencia manganoxydans: JI723_00020
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Entry
JI723_00020 CDS
T08377
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
pmag
Providencia manganoxydans
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmag03032
]
JI723_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
pmag03400
]
JI723_00020 (gyrB)
Enzymes [BR:
pmag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
JI723_00020 (gyrB)
DNA replication proteins [BR:
pmag03032
]
Prokaryotic type
DNA Topoisomerases
JI723_00020 (gyrB)
DNA repair and recombination proteins [BR:
pmag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JI723_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
DUF6865
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QQO62432
LinkDB
All DBs
Position
3623..6037
Genome browser
AA seq
804 aa
AA seq
DB search
MSNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGFCDDIV
ITIHADNSVSVQDDGRGIPTGIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGV
SVVNALSEKLELTIRRDGKVHEQVYSHGEPQGPLTVVGETDQTGTRVRFWPSMDTFKGIT
EFEYDILAKRLRELSFLNSGVSIRLIDKRDGKEDHFHYEGGIKAFVEYLSRNKTPIHPSV
FYFSTEKDGIGVEIAMQWNDGFQENVYCYTNNIPQRDGGTHLAGFRASMTRTLNNYMDKE
GYQKKAKVSATGDDAREGLIAVISVKVPDPKFSSQTKEKLVSSEVKTAVETMMNERFVEY
LLENPNDAKIVVGKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQERDPALSEL
YLVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGR
DEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKG
KQEQYIKDDDAMDEYLISIALDGAALHLSADAPAMKGEELEKLVVEYNAAHKIIRRLERL
YPQALLNSLVYHSTLTEDALKNNEQVEEWAKTLVQRLEENELLGSTYSYSITENRERQLF
EPTIRIRTHGVDTDYNLDFDFVHGSEYRRITHLGDMIADLIEEGAYIERGERRQNIENFE
EALAWLTRESRRGLSVQRYKGLGEMNPEQLWETTMDPNTRRMMRVTVKDAIATDQLFTTL
MGDAVEPRRAFIEENALKAANIDI
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatacatatgactcctcaagtatcaaggtattaaaagggctggatgcggtgcgt
aagcgcccaggcatgtatatcggtgataccgacgatggtaccggtcttcatcacatggtc
ttcgaggttgtcgacaacgctatcgacgaagccctcgccggtttttgtgacgacatcgtg
atcacaatccatgctgataactcggtctccgttcaagatgacggtcgtggtattccaaca
ggtatccatgaagaagaaggggtatcagcagcagaagttatcatgactgttctgcacgca
ggcgggaaatttgacgataactcctataaagtctccggcggattgcatggagttggggta
tctgttgttaacgccttatctgaaaaactcgaattgactatccgtcgcgatggtaaagtt
cacgaacaagtatatagccatggtgagccacaaggcccactgactgtcgtcggtgaaaca
gaccaaacaggaacacgtgttcgcttctggccaagcatggatacctttaaaggcatcact
gaatttgagtatgatattttagctaagcgccttcgcgagctgtcattcttaaactcaggg
gtatcaattagactgattgataaacgtgatggtaaagaagatcactttcactatgaaggt
ggtatcaaagcctttgttgagtatctaagccgtaacaaaacgccaatccacccatccgta
ttttatttctcaaccgagaaagatggcattggtgttgaaattgccatgcaatggaacgat
ggtttccaagaaaatgtttactgctacaccaacaacattccacaacgtgatggcggtact
caccttgcaggcttccgagcttcaatgacgcgtactttgaacaactacatggataaagaa
ggctatcagaagaaggccaaagtcagcgcaacgggtgacgatgctcgtgaaggcttgatt
gctgttatctctgtcaaagtccctgatcctaagttttcatcacaaaccaaagaaaaattg
gtttcttcagaggtaaaaaccgctgttgaaacgatgatgaacgaacgttttgttgaatac
ctgttagaaaatccaaacgacgcaaaaatcgttgttggtaaaatcattgacgccgcgcgt
gcacgtgaagcggctcgtaaagcacgtgaaatgacgcgtcgtaaaggtgcactagactta
gcgggcttgccaggcaaactggctgactgtcaagaacgcgaccctgcactgtctgaactc
tacttagtggaaggggactctgcgggcggctctgcaaaacaaggccgtaaccgtaagaac
caagcgattttgcctctgaaaggtaaaattcttaacgttgaaaaagcgcgtttcgataaa
atgctctcctcacaagaagtggcaaccctaatcaccgcattaggctgcggcattggccgt
gatgagtacaatccagacaaactgcgctatcacagcattattatcatgacggatgctgac
gtcgatggttcacacattcgtaccctgctactcactttcttctatcgccaaatgccagag
attgttgagcgaggtcatgtgtatatcgctcagccaccactgtataaagtgaaaaaaggc
aaacaagaacaatatattaaagatgatgatgcgatggatgagtatctgatctctattgct
cttgatggcgcagcgctgcatttaagtgccgatgcacccgcgatgaaaggtgaagaactg
gaaaaattggtagtcgaatacaatgcggcacataaaatcattcgtcgccttgaacgcctc
tacccgcaagctctactcaatagcttagtttatcactcaacgctgacagaagatgcattg
aaaaataacgagcaagttgaagagtgggctaaaaccttagttcagcgtttagaagagaac
gagctgctggggagtacttatagctatagcatcactgaaaaccgtgaacgccagctattc
gagcctaccattcgtattcgtacgcatggcgttgatactgactacaacttagactttgat
tttgtccacggtagtgaatatcgtcgtatcacccatctcggagacatgattgctgatctt
atcgaagaaggggcttacatcgaacgtggtgaacgccgtcaaaatatcgaaaattttgaa
gaagcgttagcatggctcactcgtgaatcacgtcgtggtctctctgtacaacgttataaa
ggccttggtgaaatgaacccagagcagttatgggaaaccactatggatccaaatacacgt
cgtatgatgcgtgtgacagtcaaagatgcgatagctacagaccaactattcacaacatta
atgggtgatgcagttgaacctcgtcgtgcctttattgaagagaatgctctgaaagcggca
aatattgatatctaa
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