Providencia manganoxydans: JI723_08750
Help
Entry
JI723_08750 CDS
T08377
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmag
Providencia manganoxydans
Pathway
pmag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI723_08750 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmag03019
]
JI723_08750 (rne)
03009 Ribosome biogenesis [BR:
pmag03009
]
JI723_08750 (rne)
Enzymes [BR:
pmag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
JI723_08750 (rne)
Messenger RNA biogenesis [BR:
pmag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JI723_08750 (rne)
Ribosome biogenesis [BR:
pmag03009
]
Prokaryotic type
rRNA processing factors
JI723_08750 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QQO64026
LinkDB
All DBs
Position
complement(1980458..1983742)
Genome browser
AA seq
1094 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPIKEIAREYFPSNYHSQGRPNIKDVLKEGQEVIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEDRTELKEALSSLEIPDGMGLIVRTAGVGKSAESL
QQDLLYRLRHWEAIKKAAENRPAPFLIHQESNVIVRAFRDYLRPDIGEILIDNPKVVEMA
RNHIEAIGRGDFASKIKHYSGDVPLFSHYQIESQIESAFQREVRLPSGGALVIDTTEALT
AIDINSSRSTRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE
NRLREAVRQDRARIQIARISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSVLRLIEEEALKENTHEVHAIVPVQIASYLLNEKRNAVSEIETRQRNVRVVIVPNDQMQ
TPHFHVIRIRKGEEINTLSYNLAQYHETETLNGTDETTTERKMPEQPAISAFALQEPVEQ
PVAAKQKENKPRPQTPKQPAKADSEVSLFSKIAAFFKKLFGEEEKVVEKPVEKNRQNNDR
RRNNDRRNNNNRRNNRRDRDDNNENRDNRDNRSNRNAQSDDNNNRKGRNNNNKNANQQND
QATDSNNRDAQQQQRRDQRAERRRRQDEKRQQQAAKTQQDVSQDVDSSTTEKEEAQPRPV
TPRRQRRQLTQKVRITDNDNVDVIAQSETTETVDVVAENNAKPIAALPAPTTSVEMQSSR
VVEPSNDELPETQTDDEEKQDTIIPRRSRRSPRHLRVSGQRRRRYRDERHLTKSPMPLFA
AVASPELASGKVCISYPIVQPQQDAVAIITNEEMLEQQAVFNTESAVTTDDVTTQPITPV
HEAVSMEPKEAEVDIVTEKTEQQSVHLEPVFAPQAEPVVTEHSEQVIQETQESRQPEPPV
EVLPITVEPVIEEAVVEQPKVEQSVEEVPVETVQAEDVPVETKPLEQVQSETIQESAVEI
ETARTAKSAVIVASKAVRHAYSPMTKAPAPEVVASTFEMKVYQREASTFVSKGAGGHVAT
NCATSEMAKPTSNE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaataaacgcaactcaacaggaagagttgcgtgttgcccttgttgat
gggcaacgtctctatgatctggatatcgaaagcccgggtcatgaacaaaaaaaggcaaat
atttacaaaggtaaaatcactcgtatcgaacctagtcttgaagccgcttttgttgattat
ggtgctgaaaggcacggtttccttcccatcaaagaaatcgctcgcgaatatttcccaagc
aactaccactctcaaggtcgtcctaacatcaaagatgtgttgaaagaaggccaagaagtt
attgtccaagttgataaagaagagcgcggtaataaaggtgcagcattaaccacctttatc
agcctagccggtagctatttggtattaatgccaaataatccacgcgcaggtggcatttct
cgtcgtattgaaggtgaagatcgtactgagttgaaagaagcgctctcttctctagaaatt
cctgatggcatgggccttattgtccgtactgcgggggtcggtaaatctgctgagtcttta
cagcaagatttactctatcgcttacgtcattgggaagccatcaaaaaagccgcagaaaac
cgccctgcacctttcttgatccaccaagaaagtaacgtgattgtacgtgcattccgagac
tatctgcgccctgatatcggtgaaattcttatcgataatccgaaagtagtcgaaatggca
cgcaaccacattgaagcaattggccgtggtgattttgcaagtaagatcaaacattacagt
ggtgatgtgccattatttagccattaccaaatcgaatcacagattgaatctgcgtttcaa
cgtgaggttcgccttccttcaggtggtgcattagttattgataccacagaggcattgaca
gctatcgatatcaactcctcacgttcaacccgtggtggcgatattgaagaaactgcattc
aatactaacttggaagcggccgacgaaattgctcgccaattgcgtttacgtgacctcggt
ggcttaattgttatcgactttattgatatgacgcctgtaaggcatcaacgtgaagtggaa
aatcgtttacgtgaagccgttcgccaagacagagcacgcatccaaatcgcgcgcatttct
cgttttggcttactcgaaatgtctcgccaacgtttgagtccatctttaggtgaatctagc
caccatgtttgcccacgctgttcaggtaccggcaccattcgtgataatgagtcactgtct
ctttctgtccttcgcctgattgaagaagaagcattgaaagaaaacacccatgaagtgcat
gcaatcgttccggtacagattgcctcctatttgcttaacgaaaaacgtaacgctgtcagt
gaaattgaaacacgtcaacgtaatgtgcgtgttgtcatcgtacctaatgaccagatgcaa
acaccacatttccacgtgatccgtattcgtaaaggcgaagagattaatacactaagctac
aacttagcgcagtaccatgaaacggaaacactgaatggtaccgatgaaacaaccactgag
cgaaaaatgcctgagcaacctgcaatttctgcatttgctttgcaggaacccgtagagcaa
cctgttgcggctaaacaaaaagaaaataaacctcgccctcaaacaccaaaacaacctgct
aaggcagattctgaggtgagtttattcagtaaaattgcggcattcttcaagaaactattt
ggtgaagaagagaaagttgttgagaaacctgtcgaaaaaaatcgtcagaacaacgacaga
cgtcgtaacaacgatcgtcgcaacaacaataaccgccgtaataaccgtcgtgaccgcgat
gataataatgaaaatcgtgataatcgcgacaatcgttctaatcgtaatgcacaaagtgac
gataacaacaatcgtaagggacgcaataacaataataagaatgctaaccaacaaaacgat
caagcaaccgatagtaataatcgtgatgcgcaacagcaacagcgtcgtgaccaacgcgct
gaacgtcgccgccgtcaagatgagaagcgtcagcaacaagccgctaaaactcaacaagat
gtaagccaagacgttgactcatcaaccacagagaaagaagaggctcagccgcgtcctgtt
acaccacgtcgccaacgtcgtcagttaacgcaaaaagttcgtattactgataacgataac
gttgatgtgatagcgcaaagtgaaaccacagaaactgtagacgtggtcgctgaaaataat
gctaaaccgattgcagcattaccagcaccaacgacctctgttgaaatgcaatctagtcgt
gttgttgagccaagtaatgatgaattaccagaaactcaaacagatgatgaagaaaaacaa
gacactatcattcctcgtcgttcacgccgttcacctcgtcaccttcgtgtgagtggtcaa
cgtcgccgtcgttatcgtgatgagcgtcatttaactaaatcaccaatgccactatttgct
gctgttgcatctcctgaactggcatcaggtaaagtgtgtattagctacccaattgttcaa
ccacaacaagatgcggttgccattattactaatgaagaaatgcttgagcaacaagctgta
ttcaacactgaatcagcggtcacgactgatgacgtcacgactcagcctattacgcctgtt
cacgaagctgtatcaatggagccaaaagaagctgaagtcgatatcgttactgaaaaaaca
gagcaacaatctgttcatttagaacctgtatttgccccacaagcagagcctgttgttacg
gaacattcagaacaagtcattcaggaaacacaagaaagtcgtcaaccagaaccaccggtt
gaagtgttacctataacagtagaacctgttatcgaagaggctgtggttgaacaacctaaa
gtagaacaatctgttgaagaggttcccgtggaaaccgttcaggctgaagatgttccagta
gaaacaaaaccacttgaacaagtgcaaagcgaaaccatccaagagtcagctgttgaaata
gagacagcacggacagcaaaatccgcggttatcgtggcaagcaaagcagtacgccatgct
tactcaccaatgaccaaagcaccagctccagaagtggttgcgtcaacgtttgaaatgaag
gtttatcaacgtgaagcttcaacttttgttagtaaaggcgccggaggacatgttgcaaca
aactgcgcgacatccgaaatggcaaaaccaacaagtaacgaataa
DBGET
integrated database retrieval system
