Providencia manganoxydans: JI723_08865
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Entry
JI723_08865 CDS
T08377
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmag
Providencia manganoxydans
Pathway
pmag03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JI723_08865 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmag03400
]
JI723_08865 (mfd)
Enzymes [BR:
pmag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JI723_08865 (mfd)
DNA repair and recombination proteins [BR:
pmag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JI723_08865 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QQO64049
LinkDB
All DBs
Position
complement(2003020..2006457)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSSKYRYELPTRGGDVRHLGCLIGAAGALECAQMMERHQGPVVLVTRDMQNTLRLRDEIQ
QFTKLPIETLSDWETLPYDNFSPHQEIISQRLSTLYRLPSMQKGVLILPVNTLMQKVCPA
AFLTGHALVMAKGDKLSRDNLRDELDKAGYRHVEQVLEHGEYATRGALLDLFPMGSSLPY
RIDFFDDEIDSLRTFDVDSQRTLEEVVSINLLPAHEFPTDKDAIERFRSQWRERFEVRRD
PEHIYQQVSKKTLPTGIEYWQPLFFSQPLPSLFEYLPENTLFISQQYQEAAKRFQIDTQQ
RFESRGVDPMRPLLPPAELWLTVEQLNQALKKWPRVQLSTETLADKAANTNLDYQPLPDI
STQGQSKQPLEKLRQFIEHFEGTVIFSVESEGRRETVTELLGRLKIRPDIINDYFNTTDN
RFAIMVGAAEHGFIQPHKALICESDLLGERVVRRRSDHRRTINTDTLIRNLAELRPGQPV
VHIEHGVGRYQGLTTLEAGGIKAEYLILTYAGNDKLYVPVSSLHLISRYSGGADENAPLH
RLGSDSWGKARQKAAEKVRDVAAELLDIYAQRAAKPGFAFKHDKEQYQEFCQGFPFETTP
DQEQAINAVLSDMCQPIAMDRLVCGDVGFGKTEVAMRAAFLAINNNKQVAVLVPTTLLAQ
QHYDNFRDRFANWPVRIEMLSRFKTAKEQQQIIAEAAEGKVDILIGTHKLLQSDLVWHDL
GLLVVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR
LAVKTFVRQYDDLVVREAILRETLRGGQVYYLYNDVENIEKAKKRLEELVPEARFVVGHG
QMRERELERVMSDFHHQRFNVLICTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV
GRSHHQAYAYLLTPHPKAMTTDAHKRLEAISSLEDLGAGFALATHDLEIRGAGELLGEDQ
SGQMTTIGFTLYMELLESAVDALKDGREPSLEDLINQQTEVELRMPVLLPDEYIHDVNIR
LSFYKRIASARDEDELSELRIELIDRFGTLPDAGKFLLASAAIRLEAEKLGIKRIEAHEQ
GGFIEFSEKNKVSPNFLISLLQNQPKTFRLDGPVKLKFVIDLSDRVTRIDFIKQLLRDFS
DNLLD
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaaaatatcgttacgaactccctactcgcggtggtgatgtccgccatttagga
tgcttgattggggctgcgggtgcacttgagtgtgcacagatgatggaacgtcatcaaggt
cctgtggtgttagtcacaagggatatgcaaaataccttacgactacgcgatgaaatccaa
cagtttaccaaactgccaatcgaaacgctttctgactgggaaaccttaccttatgacaat
ttttcccctcatcaagaaattatttcacagcgtttgtctaccttatatcgcttaccaagt
atgcaaaaaggggttttgatcttaccggtcaataccttgatgcaaaaagtttgtcccgca
gcgtttctcaccggccatgcgctggtcatggcaaaaggcgataaactttctcgcgataat
ttacgtgatgaactcgacaaagcgggttatcgccatgttgaacaagtcttagaacacggt
gaatacgctacacgaggcgcattattagatttattcccaatgggcagttcattaccctac
cgtattgacttctttgatgatgaaattgatagtttgcggaccttcgatgtcgacagccaa
agaacccttgaggaagtggttagtattaatttactccctgcacatgaattccctactgac
aaagacgccattgaacgctttcgtagccaatggcgcgaacgttttgaagtcagacgtgat
cctgaacacatttatcaacaagtcagtaaaaagaccttacctacggggatcgaatattgg
caaccgttattttttagccaaccattaccttcattgttcgaatatttaccagaaaatacg
ttatttatctcgcaacaataccaagaagccgcgaaacgctttcaaatagatacacaacaa
cgctttgagagccgtggtgtcgatcctatgcgaccattgttaccccctgctgagttatgg
ctaacggttgaacaacttaatcaagccctcaaaaaatggccgcgtgtacaattatcgact
gagacattggcggataaagcggccaataccaacttagattatcagccattacccgatatc
agcactcaagggcaaagcaagcaaccgcttgaaaaactgcgccaatttattgagcatttc
gaaggtacagtgattttctccgttgagagtgaaggacgtcgtgaaacggtgactgaattg
ctcggccgtttaaaaattcggcctgatattattaatgattactttaatactacagacaat
cgttttgctatcatggttggagccgctgagcatggttttattcagccacataaagcgtta
atttgtgaaagcgatttattgggtgaacgtgttgtccgtcgccgcagtgaccatcgccgt
actatcaatacagatacgctgatccgtaaccttgcagaactgcgccccggtcaaccggtc
gtccatatcgaacacggtgttggtcgttatcagggtcttacaaccctcgaagcaggtggc
atcaaagctgagtatttaatattaacttacgcagggaatgacaaactgtatgtccctgtt
tcatcactacatctaattagccgctattcaggtggcgctgacgaaaatgcgccactacat
cgtttaggtagtgacagttggggcaaagcacgtcaaaaagcggccgaaaaagtgcgtgat
gtcgccgctgagctactcgatatctatgctcagcgcgcagcaaaacctggttttgccttt
aaacatgataaagagcaatatcaagagttctgccaaggcttcccatttgaaaccactcct
gaccaagagcaagctatcaacgcagtactcagtgatatgtgccaacccatagcgatggat
cgtttagtctgtggtgatgttggctttggtaaaacagaagtcgctatgcgtgcagccttc
ttagctatcaataataacaagcaagttgcggtattagtaccgaccacgctactcgcccag
cagcattatgataacttccgtgatcgcttcgccaattggcctgtcagaattgaaatgctg
tcacgctttaaaaccgccaaagagcaacaacaaatcattgcagaagcagccgaaggtaaa
gtcgatattttgattggtactcataaattactgcaaagtgatttggtgtggcatgatctg
ggcttgctcgttgtcgatgaagagcatcgttttggtgttcgccataaagaacgcatcaaa
gcaatgcgtgcagatgttgatatcttgaccctaacggcgacacctatcccacgaaccttg
aatatggcgatgagtggtatgcgtgatttatcgattattgccacaccccccgctcgccgc
ttagcggtaaaaacctttgtgcgccaatatgatgatcttgtggttagagaagcgattctg
cgtgaaaccttgcgtggtgggcaagtttattacctttacaatgatgttgaaaatattgag
aaagccaaaaaacgtcttgaagaattagtacccgaagcacgttttgttgttggtcacggg
caaatgcgtgagcgtgaacttgaacgtgtgatgagtgattttcatcaccaacgcttcaat
gttttgatttgtaccaccattattgaaacaggtatcgatattccaaccgccaataccatt
attattgagcgtgccgaccactttggtttagcacaattgcatcaattgcgtggtcgtgtc
ggtcgttcacatcatcaagcttacgcctacttactcacgccacacccgaaagcgatgacc
accgatgcgcataaacgactggaagcgatttcatcactggaagatttaggtgcaggtttt
gcccttgcgactcatgatcttgaaattcgtggtgcaggtgaactccttggcgaagatcaa
agtgggcaaatgaccacgattggcttcaccttgtatatggagttgcttgaaagtgccgtc
gatgcactaaaagatggacgggaaccttcactagaggatttaattaaccagcagacggaa
gttgagctacgcatgccagttctcctccccgatgaatacattcatgatgtaaatattcgc
ctgtcattttataaacgcattgccagtgcccgtgatgaagatgaactgagtgaactgcgt
attgaattaattgatcgctttggaacgttacctgatgcagggaaatttttacttgctagc
gcagctatccgtttagaagctgaaaagctaggcattaaacgtattgaagcacatgagcaa
ggcgggtttatcgagtttagtgagaaaaacaaagtttcacctaatttcttaattagttta
ttacaaaaccagcctaaaaccttccgtcttgatggcccagtgaaattgaagtttgtaatt
gatttaagtgacagggtcacgcgcattgattttatcaagcaactgctacgtgatttttct
gataacttacttgattaa
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