Providencia manganoxydans: JI723_09870
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Entry
JI723_09870 CDS
T08377
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmag
Providencia manganoxydans
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmag03032
]
JI723_09870 (topA)
03400 DNA repair and recombination proteins [BR:
pmag03400
]
JI723_09870 (topA)
Enzymes [BR:
pmag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JI723_09870 (topA)
DNA replication proteins [BR:
pmag03032
]
Prokaryotic type
DNA Topoisomerases
JI723_09870 (topA)
DNA repair and recombination proteins [BR:
pmag03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JI723_09870 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
GSG-1
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QQO60634
LinkDB
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Position
2221724..2224318
Genome browser
AA seq
864 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGSGYVVKSSVGHIRDLPKSGSGSQKSTGSSTDKTKKVKK
DPQAALVKRMGIDPYHGWKANYQILPGKEKVVSELQALAADADHVYLATDLDREGEAIAW
HLREVIGGDDSRFSRVVFNEITKNAIKQAFESPGELNIDRVNAQQARRFMDRVVGYMVSP
LLWKKVARGLSAGRVQSVAVRLIVEREREIKAFVPEEYWELHADLADKDIAALRMEVTHR
LGKPFKPVTKAETEAAVGLLEKARFQVVDREDRPTSSKPSAPFITSTLQQAASTRLGFGV
KKTMMMAQRLYEAGYITYMRTDSTNLSQDALNMVRGYISDNFGNKYLPKDVIVYSSKENS
QEAHEAIRPSSVDVLTDSLKDMEADAKKLYQLIWNQFVACQMTPAKYDSTTLTVKAGDFE
LKAKGRTLRFDGWTRVMPALRKNDEDKTLPPIQVGSELSLVELLPSQHFTKPPARFSEAS
LVKELEKRGIGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTDRLEENFNDLMNYD
FTARMENQLDHVANHEAEWKAVLDEFFSDFSKQLNIAEKEPEEGGMRTNPMVITSIICPD
CERHMGIRTASTGVFLGCEGYALPPKERCKKTINLIPEHEVLNILEGDDAETNALRAKRR
CPKCGTAMDSYVVDNQRKLHVCGNNPACEGYEIEEGEFRIKGYDGPVVECDKCGSEMHLK
TGRFGPYMGCTNEECKNTRKILKNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFL
AANTFPKSRETRAPLVEELQRFRERLPEKLAYLADAPAKDPEGNPTVVRFSRKTKQQYVS
SDKNGKATGWSAFYVDGKWEVKDK
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgttatcgtggagtccccggcaaaagccaaaacgatcaataagtat
cttggcagtggctacgttgtcaaaagcagcgttggccacattcgtgatctgccgaaaagc
gggtccggctcacaaaagagtacaggctcatctaccgacaaaaccaaaaaggttaaaaaa
gatcctcaagctgcgttagtaaaacgtatggggattgatccttaccatggttggaaggcg
aattatcaaattttgcccggtaaggaaaaagtagtttctgaattacaagcgttagcggca
gatgcagaccatgtctatcttgcgacggaccttgaccgcgaaggggaagctattgcatgg
catttacgcgaagtgattggaggggatgactcccgctttagtcgtgtcgtgtttaatgaa
attactaaaaatgcgattaaacaagcgtttgaaagcccaggtgaactaaatattgaccgg
gttaatgcgcaacaagcacgccgttttatggatcgcgtggttggttatatggtatcgcct
ttattatggaaaaaagtggctcgtggtctatctgcgggtcgtgtgcaatcagtcgctgtg
cgtctgattgttgagcgtgaacgtgaaattaaagcgtttgtgcctgaagagtattgggag
ctccatgccgatctcgctgataaagatatcgcggcattgcgaatggaagttactcatcga
ttaggtaagccttttaaacccgttaccaaagcagaaactgaagcggcggtaggcctgtta
gaaaaagcgcgttttcaagttgtcgaccgtgaagaccgaccaacgtcaagcaaacctagc
gcaccgtttatcacatcaacattgcaacaagcggcaagtactcggcttggctttggtgtg
aaaaaaaccatgatgatggctcagcgtctttatgaagcgggttatatcacctatatgcgt
acagactcaaccaatttgagccaagatgcattaaatatggttcgtggttatatcagtgac
aattttggtaataaatatctaccaaaagatgtcattgtctatagcagtaaagagaattcg
caagaagcgcacgaagccatccgtccttcaagtgttgatgtattaactgactcgctgaaa
gatatggaagctgatgcgaagaaattgtatcagttgatttggaatcaatttgttgcttgc
caaatgacgccggcaaaatacgattcaacaacattgactgtgaaagcaggtgatttcgag
cttaaagccaaaggccgtaccttacgctttgatggttggacgcgtgtcatgcctgcatta
cgcaaaaacgacgaagacaaaacattaccaccaattcaggtgggttctgaattatcatta
gtcgaattgctgccaagccaacatttcactaagccgccagcgcgttttagtgaagcatca
ctggttaaagagctagaaaagcggggtattggacgcccatcaacttacgcggccattatc
tcgactattcaagaccgtggttatgttaaagttgagaatcgtcgtttctacgctgaaaaa
atgggtgaaatcgttactgataggctggaagagaacttcaatgacctaatgaactacgat
tttactgctcgcatggaaaatcagctcgaccatgttgctaaccatgaggctgaatggaaa
gcggtactggatgagtttttctcagactttagtaagcaacttaatattgcagaaaaagag
cctgaagaaggtggcatgcgtactaacccaatggtgatcacatccatcatttgtcctgat
tgtgaacgtcatatggggatccgcacagcatcgacaggggtattccttggttgtgaaggt
tatgcattaccaccaaaagagcgttgtaagaaaaccatcaaccttattcctgaacacgaa
gttctgaatattcttgaaggtgatgatgcagaaaccaatgcgttacgtgcgaaacgtcgt
tgtccaaaatgcggcactgcgatggatagctatgtggtcgataaccaacgtaaactgcat
gtatgcggtaacaaccccgcttgtgaaggctatgaaatcgaagagggtgagttccgcatt
aaagggtatgatggcccagtagttgagtgtgataaatgtggttctgaaatgcacctaaaa
acaggtcgttttggtccatatatggggtgcaccaacgaagagtgtaagaacacacgtaag
atcttaaaaaatggtgaagttgccccaccaaaagaagatccagttccattgcctgaactg
ccatgtgaaaaatcagatgcttatttcgttttgcgtgatggtgctgctggcgtattcctt
gcagccaatacgttcccgaaatcacgtgaaacacgtgcgccattggttgaagaattacag
cgcttcagagagagattaccagagaaattagcatatttggctgatgctcctgctaaagat
cctgaaggaaacccaacggtggttcgctttagccgtaaaacgaaacagcaatatgtttct
tcagataaaaatggcaaagcaaccggctggagtgcgttttacgttgatggtaaatgggaa
gttaaagacaaataa
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