Providencia manganoxydans: JI723_09960
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Entry
JI723_09960 CDS
T08377
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pmag
Providencia manganoxydans
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmag03016
]
JI723_09960
Enzymes [BR:
pmag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JI723_09960
Transfer RNA biogenesis [BR:
pmag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JI723_09960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1CSD-TOTE-2
ODP
Motif
Other DBs
NCBI-ProteinID:
QQO60649
LinkDB
All DBs
Position
complement(2243001..2244944)
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AA seq
647 aa
AA seq
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MFQDNPLLAQLKQQLHSQTPRVEGLVKSTDKGFGFLEVDGQKSYFIPPPQMKKVMHGDRI
IAAVHTDKDREFAEPEELIEPFLSRFVGRIQKKDNDNRLFVIPDHPLLKDAISCRPIKEV
THDFVQGDWVVAQMRRHPLKGDKGFYADITEFITDGEDHFAPWWVTLRRHQLDRAEPQMV
DGERDDEGIERVDLTDLHFVTIDSASTEDMDDALYVERTENGDIKLYIAIADPTSYIKKD
SELDKLALARSYTNYLPGFNIPMLPRELSDNLCSLRPNERRPALVCCATILDDGHIADDI
QFFSAWVESKSKLVYDEVSDWLEKSGSWQPANKTDQQQIELLKEMADKRHQWRQQNALVF
KDRPDYRFILDDKGNVIDIIVESRRSANRIVEEAMITANLCAAIQLKNSLGFGVFNVHMG
FEPLQIEQVVQTLKDHGIETTAESLLTLEGFRQLRRKLDAQPTQFLDSRIRRFQTFAEVK
GEPGPHFGLGFDAYATWTSPIRKYTDIVNHRLLKSVIAGKPSTDKPTEELSLKLAERRRA
NRMAERDVGDWLYARFLKPFEGTDKAFPAEIIDITRGGVRVRLTDNGAVAFIPAPFLHSV
RDEIQCSQETGSVLIKGEPAYQLNDIINVNIAEVRMETRNIVARPVA
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagacaacccattgctcgcgcaacttaaacagcagctacactctcaaacgcct
cgcgttgagggcttagttaaaagcaccgataaaggtttcggtttcctagaagtagatggt
caaaaaagctactttattccaccgccacaaatgaaaaaagtcatgcatggtgatcgcatc
attgccgctgttcatactgataaagatcgcgaattcgctgaacctgaagagctgattgaa
ccctttctcagccgctttgtgggtagaattcaaaaaaaagataacgataaccgtttattc
gttattcctgatcatccacttctgaaagatgctatctcttgccgcccaatcaaagaagtt
actcatgactttgttcaaggcgattgggtcgtcgctcagatgcgccgccatcctttaaaa
ggtgacaagggtttttatgcagatatcactgagtttattactgatggcgaagatcatttt
gctccttggtgggtaacgttacgccgtcatcaactcgaccgcgctgagccgcaaatggtt
gacggtgagcgtgatgatgaaggtattgagcgtgttgatttaactgacttacactttgtc
actattgatagcgcaagcaccgaagatatggatgatgcgctctatgtcgaaagaacagaa
aatggtgatataaagttgtatatcgctattgctgatccaacaagctacatcaaaaaagat
agtgaactagataagctcgctttagcgcgttcttatactaactatctaccgggttttaac
attccaatgctgcctagagagctgtcagataatctttgctctttgcgcccgaatgaacgt
cgccctgctctggtatgctgtgcaactattttagatgatggccacattgctgatgatatt
caatttttcagcgcatgggtcgagtctaaatccaagttagtctatgatgaagtttctgat
tggctagaaaagtctggtagttggcagcctgcaaacaagactgatcaacagcaaattgaa
ttattgaaagagatggctgataagcgccatcaatggcgtcaacaaaatgcattagtattt
aaagatcgcccagactaccgtttcatattagatgataaaggtaatgtcattgatattatt
gttgaaagccgtcgctcagccaatcgtattgttgaagaagccatgatcaccgcgaactta
tgcgctgcaatccaactcaaaaatagcttaggttttggggtatttaacgtgcatatgggc
tttgagcccttacagattgagcaagttgtacaaacactaaaagatcacggtattgaaaca
acggctgaatctttacttacacttgaaggtttccgtcaacttcgccgtaaattagatgct
caaccaacccaattcctagatagccgcattcgtcgtttccaaacttttgctgaagttaaa
ggtgagccaggaccacactttgggctcggttttgatgcttatgcaacatggacttcaccg
atccgtaaatatacggatatcgttaatcatcgcctgctcaaatcagttattgccggtaag
ccttctaccgacaaaccaactgaagagctttctttaaagctagcagagcgtcgtcgcgca
aatcgcatggcagaacgagatgtcggtgattggttatatgcgcgattcttgaagccattt
gaagggacagataaagccttccctgctgaaatcattgatataacccgcggtggtgtacgt
gttagattaaccgataatggcgctgtcgcctttatacctgctccattcttacattctgta
cgcgatgaaattcaatgcagccaagaaacgggtagcgtgctaattaaaggtgagcccgca
taccaactcaatgatattattaatgtcaacatcgccgaagtgcgtatggaaactcgtaat
attgttgctcgccctgttgcataa
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