Providencia manganoxydans: JI723_10865
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Entry
JI723_10865 CDS
T08377
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
pmag
Providencia manganoxydans
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmag03016
]
JI723_10865 (rnd)
Enzymes [BR:
pmag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JI723_10865 (rnd)
Transfer RNA biogenesis [BR:
pmag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JI723_10865 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
FlgN
DUF7018
Motif
Other DBs
NCBI-ProteinID:
QQO60814
LinkDB
All DBs
Position
complement(2440438..2441562)
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AA seq
374 aa
AA seq
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MNYCLVTTDSELAQVCQQASEADWLALDTEFVRTRTYYPQLGLLQLYDGKQVSLIDPLSI
NDFSPFKALLTNKNLIKFLHAGSEDLEVFLHDFSCVPEPMVDTQVVAAFLGYPISCGFAS
LVSEHLGIELDKSESRTDWLARPLSEKQCHYAAADVFYLLPLAKILMQKVEEAGYLTDAM
EECQRTVTRRQQSIDPTLAYRNITNVCQLRGEQLACLQMLAEWRLNQAKARDMAINFVVK
EEHLWKVARYLPSSLGELDALGLTGQEIRCHGRRLLSIVEKAKQMDEQEYPQIVANLNEQ
PQYKTLFKEIKTVVKEIAEHEKFNAELLASRRQINQLLSVHWGIKSIDQQPELLDGWRGR
LLAEPITKLLSQSQ
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
ttgaattactgtttagttacaactgatagcgaacttgcacaagtgtgccaacaggcgagt
gaagccgattggctggcactggatacagaatttgtccgaactcgaacttattatccacaa
ttaggtttgctacaactttatgatggaaaacaagtttcactgatagaccctttatctatt
aacgatttttcaccttttaaggcattattaactaataaaaatctgattaaatttttacat
gcaggtagtgaagatctagaggtatttttacatgatttttcctgcgttcctgaaccgatg
gtggatacacaggttgttgccgcttttttaggttatccaatttcttgtggttttgcctca
ttagtgtcagagcacttaggtatagaacttgataaaagtgaatctcgaactgattggtta
gcgagaccactaagtgaaaaacaatgccactatgcggcggcagatgtcttctatttactg
ccattagcgaaaatcttgatgcagaaagttgaagaggctggttatcttacggatgcaatg
gaagagtgccaaagaacggttactagaagacaacaatccatcgatccgacactcgcatac
cggaacattactaatgtgtgccagctaagaggtgaacagttagcctgcttacaaatgtta
gcagaatggcgtttaaatcaagcgaaagcgcgcgatatggcaatcaactttgtggttaaa
gaagagcatttgtggaaagttgctcgttacttacctagctcgcttggcgaattagatgca
ttaggcttaacagggcaagagatccgttgtcatgggcgacgtctgttaagcattgttgaa
aaagctaagcaaatggatgaacaagaatatccgcaaattgtggcaaatcttaacgagcaa
cctcaatataaaacgctgtttaaagaaattaaaacggtagtcaaagaaattgctgagcat
gagaaattcaatgcagagttacttgcttcgaggcgccagataaaccaactactttcggtt
cattgggggatcaaatcaatagatcaacaacctgaacttcttgatggttggagaggaagg
ctgcttgctgaaccaattactaaattactttctcaatctcagtag
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