Providencia manganoxydans: JI723_15675
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Entry
JI723_15675 CDS
T08377
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pmag
Providencia manganoxydans
Pathway
pmag03030
DNA replication
pmag03430
Mismatch repair
pmag03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JI723_15675 (dnaE)
03430 Mismatch repair
JI723_15675 (dnaE)
03440 Homologous recombination
JI723_15675 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmag03032
]
JI723_15675 (dnaE)
03400 DNA repair and recombination proteins [BR:
pmag03400
]
JI723_15675 (dnaE)
Enzymes [BR:
pmag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
JI723_15675 (dnaE)
DNA replication proteins [BR:
pmag03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
JI723_15675 (dnaE)
DNA repair and recombination proteins [BR:
pmag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
JI723_15675 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Arena_ncap_C
Motif
Other DBs
NCBI-ProteinID:
QQO61675
LinkDB
All DBs
Position
complement(3453625..3457107)
Genome browser
AA seq
1160 aa
AA seq
DB search
MAEPRFIHLRVHSDYSMIDGLAKTGPLVKKVAAMGMPAFAITDFTNLCGLVKFYGATHSS
GIKPIIGADFFVESEQLGDEIAHLTVLARNNEGYQNLTLLISEAYQKGYGAIGPTIHRDW
LVKHKAGLILLSGGRKGDVGQFLLRGNQALVEECLAFYETHFPNSYYLELIRTGRPDEES
YLHAAVELATQRGLPVVATNDVRFIESSDFDAHEIRVAIHDGFTLSDPKRPKNYSPQQYL
RTEAEMCELFADIPEALENSVEIAKRCNVTIRLGEYFLPQFPTGDMKTEDFLVMRSKEGL
EERLEFLFPDEKVRAERRPEYDERLDVELNVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIDHVAQ
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLDKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDAEGNNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINPRRAKKNLEPIDIAAIPLHDQKSFDML
QRSETTAVFQLESRGMKDLIKRLRPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGAIKNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKVLPPDINCGQYHFHVNDEGEIVYGIGAIKG
VGEGPIEAIIEARQKGGIFKEIFDLCARVDIKKINRRVMEKLIMAGAFDKLGPHRAALMS
SLEDALKAADQHAKAEAIGQADMFGVLAEAPEQVESSYASVPKWPEQVVLDGERETLGLY
LTGHPITRYLSEIERYTNGLRLKDVNPTPRGQVTTVVGLVLSSKVITTKRGNRIGICTLD
DRSGRLDIMLFSDALDKYQHLLEKDSILIATGQVSFDDFNGGNKMTVRELMDISEAREKY
ARGLAISLSDKQINDQLLNRLRSTLEPHRSGTIPVHLYYQKDDARAKLKFGVVWRVTPVD
ALLNSLRTLLGNEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggctgaacctcgttttattcacttacgcgttcatagcgactattccatgattgatgga
ttagcgaaaactggcccattagtcaaaaaagtggcagcaatggggatgcctgctttcgct
attactgactttactaacctttgcgggttagtgaagttttatggtgcgacgcacagttca
gggatcaagcctattattggggctgatttctttgttgaaagtgaacaattgggcgatgag
atagcgcatctaaccgtcttagcacgtaataatgaaggctatcaaaacttaacattacta
atttcagaagcttaccaaaaaggttatggtgcgataggcccgactatccatcgcgattgg
ttagttaaacacaaagcgggtttaattctactgtccggtggacgaaaaggcgatgttggg
caatttttattgcgaggcaatcaggcgcttgttgaggaatgtttagcgttctatgaaacc
catttcccgaatagttattatctcgaactaatacgaacgggaaggccggatgaagaaagc
tatttacatgctgcggtagagcttgcgactcagcgtggtttgcctgtcgtggcgactaac
gatgtgcgttttattgagagcagtgattttgacgctcatgaaattcgcgttgccattcat
gatggttttactttatcagatcctaaacgacctaaaaattatagtcctcagcaatattta
cgcactgaagcagagatgtgtgaattatttgctgatattcctgaagccttagaaaacagt
gtagagattgctaagcgttgtaatgttactattcgcctaggtgaatacttcttacctcag
ttcccaacaggggatatgaaaacagaagactttttagtgatgcgctcgaaagaagggctt
gaagagcgccttgaatttttatttcctgatgaaaaagttcgagcggaaagacgacctgaa
tatgatgaacgtttagatgtcgagctaaacgtaatcaaccaaatgggttttcctggttac
ttcctgatcgtgatggaatttatccaatggtcaaaagacaatggtgtacctgtagggcca
gggcgaggttcgggtgcaggttctttagttgcctatgcactgaaaattaccgatctggat
ccgttagagtttgatcttctcttcgaacgcttcttaaaccctgaacgtgtttcgatgcct
gactttgacgttgacttctgtatggagaaacgtgatcaggtcattgatcatgtcgcacag
atgtatggtcgtgatgcggtatcacagattattaccttcggtacgatggcagcaaaagcg
gttatccgtgatgttggtcgagtactgggtcatccatatggctttgtagatcggatttct
aaattagtcccacctgatccagggatgacgctggataaagcatttgaagcagaacctcag
cttcctgaaatctatgaagcagatgaagaagttaaagcgctcattgatatggcgcgtaag
cttgaaggggttacccgtaatgcggggaaacacgcaggtggcgtagttattgcgccaacc
aagatcacggattttgctcccctatattgcgatgcagaagggaacaaccctgttactcaa
tttgacaaaaacgatgtcgaatatgcgggtttagttaaatttgactttttgggattgcgt
acgctgacgatcattaactgggcgttggaaatgatcaacccaaggcgagcaaagaaaaat
ttagagcctattgatattgctgcgatccctctacatgatcaaaaaagttttgacatgttg
caacgttcagaaacgacagcggtattccagttggaatcccgtggtatgaaagatctgatc
aagcggttacgcccagactgttttgaagacatgatcgctttggtggcactatttcgccca
ggcccattacaatcagggatggtagataactttatcgaccgtaaacatgggcgtgaagag
atttcataccctgatgtacaatggcaacatgagtcattaaaacctgttctagagccaaca
tacggtattatcttataccaagaacaggttatgcagattgctcaggttcttgcaggttat
acattaggcggcgccgatatgttgcgtcgtgcaatgggtaaaaagaaacctgaagagatg
gcgaagcagcgttctgtatttgaagaaggcgccatcaaaaatggtgttgatggcgagctg
tcgatgaaaatctttgacttggtagagaaatttgccggttatggatttaacaaatcacac
tcagcagcttatgcactggtttcatatcaaacattatggctaaaagcccactacccagcc
gaatttatggctgcggtaatgaccgccgatatggataacactgaaaaagtggttggtctt
gtcgatgaatgttggcggatggggttaaaagtgttaccaccagatattaattgtggtcag
tatcatttccacgttaatgatgaaggtgaaattgtttacggtattggtgcaatcaaaggg
gttggtgaaggcccaatcgaagctattatagaagcccgccaaaaaggagggatctttaaa
gagattttcgatctttgcgctcgagttgatatcaaaaaaattaaccgccgtgtgatggaa
aaactgatcatggcaggggcgtttgataaattgggtccacatcgcgcggcgctgatgtct
tcgcttgaagatgcattaaaagccgccgatcaacatgcgaaagcagaagctattgggcaa
gctgatatgttcggtgtgctggctgaagcacctgagcaagtagaaagttcgtatgcaagt
gtaccgaaatggcctgaacaagttgtacttgatggcgaacgtgaaacattggggctttat
ttaactggacatccaataacacgatacttaagtgagattgagcgctatactaacggttta
agattaaaagatgtgaacccaacccctcgtggtcaagtgacaactgtggtaggtttagtt
ctttcatctaaagttattaccactaagcgtggcaatcgaatcggtatttgtacgcttgat
gatcgttccggtcgtctggatattatgctattttcagacgcactagataaataccagcat
ttgctggaaaaagacagtatcctgattgccactggtcaggtcagctttgatgatttcaac
ggtggtaataaaatgacagtgcgggagttgatggacattagtgaagcaagggaaaaatat
gcacgagggcttgctatttcactgtcagacaaacaaattaacgaccagttgctgaaccga
cttcgcagcactcttgaaccccatcgttcaggaacgattccggttcatttgtattatcag
aaggatgacgccagagccaagcttaaatttggtgttgtttggcgtgtaacacccgttgat
gcccttctgaattctctgcgaactctgctgggtaatgagcaggtagaattagaatttgac
taa
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