Providencia manganoxydans: JI723_16160
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Entry
JI723_16160 CDS
T08377
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmag
Providencia manganoxydans
Pathway
pmag02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JI723_16160 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmag03021
]
JI723_16160 (rpoD)
Transcription machinery [BR:
pmag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JI723_16160 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
ELH
D27-like_C
Herpes_ICP4_N
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
QQO61763
UniProt:
A0ABX7ACX1
LinkDB
All DBs
Position
3569832..3571685
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AA seq
617 aa
AA seq
DB search
MEQNPQSQLKLLVTKGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLILAETTSDTDEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDLAPTA
THVGSELPQEELDKDDDEDEDDEDGDDSDSDDDNSIDPELAREKFSELRVQYEKTRQHIK
QFGRSNAQTAVAIEELSEVFKQFRLVPKQFDYLVNNMREMMDRVRFQERTIMKLCVEQCK
MPKKNFITLFSGNETSETWLTAAKAMNKPWSEKLLDVEEEILRCLQRLRQIEEETGLTIE
QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT
SESLRSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPSRSEVLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcgcagcttaagctactcgtaaccaagggtaaagagcaaggt
tacttaacctatgctgaggtcaacgaccatctgccggaagatatcgtcgattcagatcag
attgaagatatcatccaaatgattaatgacatgggcatccaggtcatggaagaagcacct
gacgccgatgatttgatactcgctgaaactacttccgatacggacgaagacgcagcagaa
gccgctgcacaagttctatccagtgttgaaagtgaaattggtcgtactactgaccctgtg
cgcatgtatatgcgtgaaatgggcaccgtcgaactcttaacccgtgaaggtgagatcgac
attgcaaaacgtatcgaagatggcatcaaccaagtccagtgttctgttgcagaataccct
gaagccattacctacttacttgaacagtatgatcgcgtagaagctggcgaaagccgccta
tctgacctaattactggtttcgtcgatcctaacgctgaagaagatttagcaccaactgca
actcacgttggttcagagcttcctcaagaagagttagataaagacgatgatgaagatgaa
gacgatgaagacggcgatgacagcgatagcgatgacgataacagcatcgatcctgaatta
gcccgtgaaaaattcagcgaactgcgtgtgcagtacgaaaaaactcgtcaacacattaaa
cagtttggccgcagcaatgcccaaacagctgttgctattgaagaactttcagaagtcttc
aaacagttccgtttagtgcctaagcagtttgactatctggtcaataacatgcgtgaaatg
atggacagagttcgtttccaagaacgtaccatcatgaaactgtgtgttgaacagtgcaaa
atgccgaagaaaaactttatcaccctgtttagtggtaatgaaactagcgagacttggtta
accgcagctaaagcgatgaacaagccatggtctgaaaaactgttagatgttgaagaagaa
attctgcgttgcctacaaaggctccgtcaaatcgaagaagaaactggcttaaccattgag
caagtcaaagatatcaaccgtcgtatgtctatcggtgaagcaaaagctcgccgtgcgaag
aaagagatggttgaagcaaacttacgtctggttatttcgattgcgaagaaatacaccaac
cgtggcttgcagttccttgacctgatccaagaaggtaacattggtttgatgaaagcggta
gataagtttgaatatcgccgtggttacaaattctcaacttatgcaacttggtggatccgt
caggcaattacgcgttcgattgcggatcaggctcgtactatccgtataccggttcacatg
attgaaactatcaacaaactgaaccgtatctctcgtcaaatgctgcaagaaatgggccgt
gaaccttcacctgaagagttagcggaacgcatgctaatgccggaagataagatccgtaag
gtactgaaaatcgctaaagagccaatctcaatggaaaccccaatcggtgatgatgaagat
tcacatctgggcgacttcattgaagataccactttagagctaccattagactcagccact
tcagagagcctgcgttcagcaactcatgaagtcttagctggtctaaccgcgcgtgaagca
aaagtactgcgtatgcgttttggtatcgatatgaacactgaccacaccttagaggaagtg
ggtaaacagttcgatgttacgcgtgagcgtattcgtcagatcgaagctaaagcattacgt
aaattgcgtcacccaagccgctcagaagtgttacgcagcttccttgatgagtaa
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