Providencia manganoxydans: JI723_18070
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Entry
JI723_18070 CDS
T08377
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmag
Providencia manganoxydans
Pathway
pmag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JI723_18070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmag03019
]
JI723_18070
03009 Ribosome biogenesis [BR:
pmag03009
]
JI723_18070
Enzymes [BR:
pmag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JI723_18070
Messenger RNA biogenesis [BR:
pmag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JI723_18070
Ribosome biogenesis [BR:
pmag03009
]
Prokaryotic type
rRNA helicases
JI723_18070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QQO62111
UniProt:
A0ABX7ADS9
LinkDB
All DBs
Position
complement(3974588..3976528)
Genome browser
AA seq
646 aa
AA seq
DB search
MTTETDISFADLGLSASILTALNDLGYEKPSPIQQQCIPLLMEGNDVLGMAQTGSGKTAA
FSLPLLHNIDPDLKAPQILVLAPTRELAVQVAEAMGDFSKHMSRVNVVALYGGQRYDVQL
RALRQGPQVVVGTPGRLLDHLKRGTLDLSKLKGLVLDEADEMLRMGFIEDVENIMSQIPA
DHQTALFSATMPEPIRRITRRFMKEPKEIRIQASITTRPDIAQSYWTVYGMRKNEALVRF
LEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDIL
IATDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRN
VERTMKLTIPEVELPDSQLLSERRQAKFAEKIQQQFESSDLDQYRALLAKLSPSEDVDME
TLAAALLKMAQGERALILPPDAPRRPRREFNDRDDRRRDRNNSNGNGFERAERGGSARRE
RRDVGDMEMYRIEVGRDDGVEVRHIVGAIANEADISSRYIGNIKLYGTHSTIELPKGMPT
DVLTHLSRARILNKPTQMQLIGDAQPFERRERRGGPRREGGSEGGFGAGRRNDREGGNRR
SGGDRDNAGGNRRGGNRDRGNSSAPRGRNEDHNTAAPRRRSTSHNA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgagactgatatctctttcgctgatttaggtttatcagcgtctattttgact
gcactaaacgacctgggatacgaaaaaccttcaccgatccagcagcaatgtatcccattg
ttgatggaaggtaatgatgtgctggggatggcccaaacaggtagtggtaaaactgctgct
tttagtttgccgttactccataacatcgatcctgatttaaaagccccacaaattttggtt
cttgctccaactcgtgagttggctgttcaagttgctgaagcgatgggcgatttctctaaa
cacatgagccgcgttaatgttgttgctctgtatggtggccaacgctatgacgtacaatta
cgtgctctgcgccaaggcccgcaagtggttgtcggtacgcctggccgcctacttgaccat
ctaaaacgtggtactttggatctttctaaattgaaaggcctcgtattagacgaagccgat
gaaatgctacgtatgggctttattgaagatgttgaaaacatcatgagccaaattccagct
gatcatcaaactgcgttgttctctgcgactatgcctgagccaattcgtcgtattacacgc
cgtttcatgaaagagcctaaagagatccgcattcaagctagcattacaacacgtccagat
attgctcaaagctattggactgtgtatggcatgcgtaagaacgaagcattagttcgtttc
ttagaagctgaagatttcgatgctgcaatcatctttgtgcgtactaaaaacgcaacattg
gaagtcgctgaagcgcttgagcgtaatggttacaacagtgcggcactgaatggtgatatg
aaccaagcactgcgtgaacaaaccttagagcgtttaaaagatggtcgtttggatatattg
attgcaactgacgttgcggctcgcggtcttgacgttgagcgtatcagcctagttgttaac
tatgatattccaatggatgcagaatcttacgttcaccgtatcggtcgtactggccgtgcg
ggccgtgcgggtcgcgcattattattcgttgagaatcgtgagcgtcgtttgctgcgtaac
gttgaacgcaccatgaagctgactattccagaggtggaactgccagattctcagctatta
agtgaacgtcgtcaggcgaaatttgctgaaaaaattcaacagcaatttgaaagcagcgat
ttagatcaataccgtgcactgttggctaagctgtctccatcagaagatgtagatatggaa
acattagcagcagcactgctgaaaatggctcaaggtgaacgtgccctgatcctgccacct
gatgctccacgtcgtccacgtcgtgagtttaacgaccgtgatgatcgtcgccgtgatcgc
aataacagcaatggcaatggttttgagcgtgcagagcgtggcggtagtgctcgtcgtgag
cgtcgtgatgttggtgatatggaaatgtaccgtatcgaagttggccgcgatgatggtgta
gaagttcgtcacattgttggtgcgattgcgaacgaagctgacatcagcagccgttatatt
ggtaatattaaattgtatggtacccactctaccattgaattaccaaaaggcatgccaact
gacgtattaacccatttaagccgtgcacgtattctgaacaaaccaactcagatgcaactg
attggcgatgcgcaaccatttgaacgtcgtgagcgtcgtggtggtccacgtcgcgaaggt
ggtagcgaaggtggttttggtgcaggccgtcgtaacgaccgcgaaggtggaaaccgtcgt
agtggtggtgatcgtgataatgcgggcggtaaccgccgtggtggaaaccgtgatcgtggt
aatagcagcgctccacgtggtcgtaatgaagatcataatactgcggcaccacgtcgtcgc
agcactagccataacgcataa
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