Paenibacillus marchantiae: PTQ21_01735
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Entry
PTQ21_01735 CDS
T08974
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PTQ21_01735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmah03021
]
PTQ21_01735 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmah03400
]
PTQ21_01735 (rpoC)
Enzymes [BR:
pmah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PTQ21_01735 (rpoC)
Transcription machinery [BR:
pmah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PTQ21_01735 (rpoC)
DNA repair and recombination proteins [BR:
pmah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PTQ21_01735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WDQ33078
LinkDB
All DBs
Position
complement(325282..328896)
Genome browser
AA seq
1204 aa
AA seq
DB search
MLDVNNFEYMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCEKIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFHAGMGAEAVKKLLQ
DIDVDKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPEWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKD
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPILVEGKAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLASGNIL
NPKDGKPVVTPSQDMVLGSYYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VRALGKTVFTDKQQDAMMLTTVGKIIFNEIFPASFPYINDATRANLYQGTAEHSFVYEKG
ADLREAIMNAPLAGGVGKEYLGSIIARCFEIYHTTETAVILDKIKQLGFTYSTRAGITVA
VSDVIVPPEKFEILRQSEEKAQIVTNQYRRGLITNEERYDRIIDIWSKSKDDITEILMKS
MDRYNSIMMMVDSKARGNKSQITQLGGMRGLMANPSGRIIELPIKSNFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREDDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYCFETVRHPETKEIIAHRNELIDSDKAEAIIEAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKHVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVVKEIREAKDRREIEIQGEAESKVYSVTYGSRVRVSEGMEIEA
GDELTDGSIDPKEMLRIKGVRGVQNYILQEVQRVYRNQGVEINDKHVEVMIRQMLRKIRI
VDAGDTTLLPGSFVDTHEYERANKTAILSDKEPAVAKPILLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDQLLGLKENVIIGKLIPAGTGMHRYRSIKFAEPEDGQSSVEELEP
VSVD
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgtcaacaatttcgaatacatgaagatcgggcttgcttccccagaaaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaacgatcaactatcgtacgttgaaa
ccggaaaaagaagggctgttctgcgaaaagatttttggccctacaaaagactgggaatgt
cattgcggtaaatacaaacgcgtgcgttataaaggcgttgtctgtgatcgttgtggcgtt
gaagtcacacgtgcgaaagtacgccgcgaacggatgggccatattgagctcgctgctccg
gtatcgcatatctggtacttcaaaggtattccgagccgcatgggtctcgcactggatatg
tctccaagatctctcgaggagattatttattttgcatcatatgtagtaactgatccagga
gaaactccactggagaaaaaacagctgttgtccgagaaagaataccgcagctaccgtgag
aaatacggatatggattccacgctggcatgggtgcagaggcggttaaaaaactgcttcaa
gacattgatgtggataaagagcttgaattcctgaaggaagagctccgcactgcacaagga
caacgtcgtaaccgtgcaatcaaacgtctggaagttattgaagcgttccgcaactcgggt
aataaacctgagtggatgatcatggatgtacttcctgttatcccaccggaacttcgtcca
atggtacagctggatggtggacgttttgcaacgtctgacctgaatgacctgtatcgccgt
gtaatcaaccggaacaatcgtctgaaacgtttgcttgacttgggcgcgccagacattatc
gtgcaaaatgaaaaacggatgctgcaggaagctgttgacgcattgatcgacaacggccgt
cgtggacgccctgtaacggggcctggtaaccgtcctttgaaatccctcagccacatgctg
aaaggtaaacaaggacgtttccgtcagaacttgctcggtaaacgggttgactattccggt
cgttccgttatcgtagttggaccttacctgaaaatgtatcagtgtggtctgcctaaagat
atggcacttgaactgttcaagccttttgttatgaaagagcttgtaaataaagggcttgcc
cacaacatcaagagcgctaaacgtaaagttgagcgtgtaagtcctgaagtatgggatgtt
cttgaagaagtaattaaggagcaccctgttctgctgaaccgtgcccctacacttcacaga
ctcggtattcaagcgtttgaaccgattctcgttgaaggtaaagcgatccgtcttcacccg
ctcgtatgtacggcatacaatgccgactttgacggtgaccaaatggccgtgcacgttcca
ttgtctgctgaagctcaagcagaagcacgtatcctgatgcttgcatcaggtaacattttg
aacccgaaagacggtaaaccggttgttaccccttcccaggatatggtgcttggttcttac
tacctgaccatggacaacaaggaagaaaagggaacaggtatgatcttgcgcacggttaac
gaagctgtatccgcgtaccaacgtggtactgcaggtttacatgcacgtgtagcgattccg
gttagagcgcttggcaaaacagtcttcaccgataagcaacaagatgcaatgatgttgact
acggtcggcaaaatcatctttaatgaaatcttcccggcaagcttcccttacatcaatgat
gcaactcgtgcgaacctctaccagggtaccgctgagcattcatttgtttatgagaagggt
gctgaccttagagaagcaattatgaacgctcctttggctggtggtgtcggtaaagaatat
ctcggttctatcatcgcacgttgttttgaaatttatcatacaacggaaacagccgttatt
ttggataaaatcaaacaactcggattcacatactccactcgcgctggtatcactgtagcg
gtgtcggatgttatcgttccacctgagaaatttgaaattcttagacagtctgaggaaaaa
gcacaaatcgttacgaaccaataccgtcgtggtctgattacgaacgaagagcgctatgac
cgcatcattgatatctggtcgaaatcgaaagatgatatcaccgagattctgatgaaatcg
atggatcgctacaattccatcatgatgatggttgactccaaagcacggggtaacaaatcg
caaatcacccaattgggcggtatgcgtggtctgatggccaacccatccggtcgaatcatt
gaactcccaatcaaatcgaacttccgtgaaggtctgacggtactcgagtactttatctcg
actcacggtgcccgtaaaggtttggccgatacggctctgcgtacagcggattcaggttac
ctgacccgtcgtctcgtagacgtggcacaagatgtgatcgtgcgtgaagatgattgtggt
acagataaaggctttaccgtaagtcgtatccaggatggtaaagaggttattgaggatctc
tacgaccgtattgaaggcagatactgcttcgagactgttcgtcatccagaaacaaaagaa
attattgcacaccgtaatgaactgattgactctgataaagctgaggcaatcatcgaagct
ggcgtaaccaaactacaaatccgctccgtacttagctgccgtgcacgtcacggtgtctgc
aagaagtgttatggtcgcaacttggcgactggtaaacacgtggagatcggtgaagcagtt
ggtattatcgcagcacaatccattggtgagccaggaacacagctgacaatgcgtacattc
cacaccggtggtgtagccggagacgatattacgcaaggtttgccgcgtatccaggagttg
ttcgaggctcgtaatcctaagggtcaagcaacaatcagtgagatcgacggtgttgttaaa
gaaattcgcgaagcgaaagatcgtcgcgaaattgaaattcaaggtgaagcagaatccaaa
gtttactctgttacctacggttctcgtgtacgcgttagcgaaggcatggaaattgaagca
ggcgacgagttgacagatggttctatcgatccaaaagaaatgctgcgcattaaaggcgta
cgtggcgtacagaactacattttgcaggaagtacaacgcgtataccgtaaccaaggcgta
gaaatcaatgacaaacacgttgaagttatgatccgtcaaatgttgcgtaaaatccgtatc
gtcgatgcaggggacactacattgttgccaggatcgttcgtggatacgcatgagtacgaa
agagctaacaagacagcgattctgagtgataaagagccagcggttgcaaaaccaattttg
ctcggtattacgaaagcatccctggaaacagactccttcctctcggcggcttcgttccaa
gagactacacgtgtactgacagatgcagcgatcaaaggtaaagtcgatcagttgctcggt
ctgaaagagaatgtaatcatcggtaaactgattcctgcaggtacaggtatgcaccgttac
cgcagcatcaaatttgctgagccggaagatggccaatcttcggtagaagaacttgagcca
gtttcggttgattaa
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integrated database retrieval system
