Paenibacillus marchantiae: PTQ21_05795
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Entry
PTQ21_05795 CDS
T08974
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTQ21_05795 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmah03021
]
PTQ21_05795 (rho)
03019 Messenger RNA biogenesis [BR:
pmah03019
]
PTQ21_05795 (rho)
Transcription machinery [BR:
pmah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PTQ21_05795 (rho)
Messenger RNA biogenesis [BR:
pmah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PTQ21_05795 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
ATPase_2
AAA
OB_RNB
AAA_22
Spore_III_AA
S1CSD-TOTE-2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
WDQ33813
LinkDB
All DBs
Position
1277688..1279013
Genome browser
AA seq
441 aa
AA seq
DB search
MDLQISDLEEMKLTDLYKLAKKYQIPYYGTLKKKELIFAILRAQAEQSGLMFMQGVLEIL
PEGYGFLRPINYLPSTEDIYISASQIRKFDLRTGDLVSGKCRTPKENERYFGLLQVNAVN
GENPSAAAERLHFPALTPLYPQKKLVLETSPSHLSTRIMDVLAPVGLGQRGLIVAPPKAG
KTLLLKEIANSISTNNPEIELFVLLIDERPEEVTDMSRSVKGEVVASTFDELPENHIKVA
ELVLERALRLVEAKKDVVILLDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFGS
ARNVEEGGSLTILATALIDTGSRMDDIIYEEFKGTGNMELHLDRKLAERRIFPAIDIRRS
GTRREEVLLSKEELDTIWAIRKNMNDSHDFVEGFLKKLRNSKTNAEFLAAFDTAGSSQTS
NSGTTTTRRSPRQTAASGTTT
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggatctacaaatttccgatttggaagaaatgaaactaacggacctctacaaactggcc
aaaaaatatcaaattccctactacggcactttaaaaaagaaagaattgatcttcgctata
ttacgtgcacaagctgaacagagtggattgatgttcatgcagggtgtgctcgaaattcta
cctgaaggctacggattccttcgtccgatcaattacctgccaagtacggaagacatctac
atctcagcctcacagattcgcaagtttgacctaagaacaggtgacctcgtatcaggtaag
tgtagaacacctaaagaaaacgagcgatacttcggtttgctgcaagtcaacgctgtaaat
ggtgagaatccatcagcggctgcggaaagacttcacttcccggcattaaccccattgtac
ccgcagaagaaactggttctcgaaacatcccccagccatttgtccacacgcattatggat
gtactcgccccggtaggactgggacagcgcggattgatcgtagcacctcccaaagcgggt
aaaacacttctcctcaaagaaatcgccaacagcatctcaaccaacaacccagaaattgaa
ctatttgtcctgttgattgatgaacgtccggaagaagttacggatatgtcgcgttcggtt
aaaggggaagttgtagcttctacgttcgatgagctgccagaaaaccatatcaaagttgcg
gaattggtgctggaacgtgcgctccgtctggttgaagcaaaaaaagatgtcgttattttg
ctagatagcattacgcgtcttgctcgtgcatacaacctggtcatcccaccgtccggacgg
acacttagtggcggtattgacccggcagcattccatcgtccgaaacgtttcttcggttct
gctcggaatgtagaagagggtggaagtctgacgatcctggctacagctttgattgatacg
ggctcacgtatggatgatatcatttatgaagaatttaaaggtacgggcaatatggagctt
catctggatcgcaagctggcagagcgtcgtatcttcccggctatcgacattcgtcgttcc
ggtacacgtcgcgaagaagtgttgctgagcaaggaagaacttgatacaatctgggcgatt
cgtaaaaacatgaacgattcccacgactttgtcgaaggtttcttgaagaaactgcgtaat
agcaaaacgaatgctgagttcctagcggcatttgatacagctggcagcagtcagaccagc
aactccggaacgactacgactcgacgttcgccaagacagactgcggcgtccggtacaact
acctag
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