Paenibacillus marchantiae: PTQ21_09095
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Entry
PTQ21_09095 CDS
T08974
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmah
Paenibacillus marchantiae
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmah03009
]
PTQ21_09095 (rlmD)
Enzymes [BR:
pmah01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PTQ21_09095 (rlmD)
Ribosome biogenesis [BR:
pmah03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PTQ21_09095 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
MTS
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
PrmA
Cons_hypoth95
Methyltransf_11
Methyltransf_12
Methyltransf_23
RrnaAD
OST-HTH
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
WDQ34379
LinkDB
All DBs
Position
1978853..1980547
Genome browser
AA seq
564 aa
AA seq
DB search
MSNTNRSGRGKNRRNSAASQGQGNASASRQPSKSSRPSTRQQGKEVRPQGASLSAVRPKG
REREPAPIEGIPVSKNEETVIDIIGMNHDGEGVGRANGYTLFVQGALPGETVRVRVMKTK
KQYGYAKLLEIVKASPDRVSAPCPIYDQCGGCQIQHMSYAGQLAWKRQLVVDNLQRIGKL
NVLVEDDEQAIQTEQTSTEEQMNGSNRIRLRMEGVMIEDDTTQGIRVLPTMGMDEPWRYR
NKAQVPIGAAEGGLVGGFYAKGSHRIIDMDTCLIQHEHNDEVVAKVKEIGSHFGISAYNE
ETGRGLLRHVVVKKAFRTGEMMLVLVTNGRDIPYKDEWIGSIREAIPHVASICQNVNKKQ
TNVIFGDETRVLWGRDVIYDYIGDVQFAISARSFYQVNPVQTEVLYGKTVEYAGLSGKET
VIDAYCGIGTISLFLAQHADQVYGVEIVPEAIEDARSNALLNEMKNVKFEVGASEDVIPR
WKEQGIEADVIVVDPPRKGCDPRLLDTILEMKPERVVYVSCNPSTLARDLRVLEDGGYRT
VEVTPVDMFPHTVHVESVAMLVRV
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
ttgtctaatacgaaccgcagcggtcgtggaaaaaaccgccggaattcggctgcctcacag
gggcaagggaatgcttcagcatcccgccagccgagcaaatcatctcgtccatccacacgt
cagcaagggaaagaggtgcggccacaaggcgcatctctttctgccgttcgtccgaaggga
cgggaacgtgaacctgcaccaatcgaaggaattcctgtaagtaaaaatgaagagaccgtc
atcgatatcatcggtatgaaccatgacggtgaaggtgtcggccgtgccaatggatacacg
ctgttcgtgcaaggtgcgcttccgggcgaaaccgtgcgcgtaagagtgatgaaaaccaag
aagcagtacggctatgccaaactgctggagattgtgaaggccagcccggatcgtgtatcc
gcgccttgcccgatctacgatcaatgcggcggatgccagatccagcatatgagctacgct
ggacagcttgcgtggaaacgccagctggtggtggacaatttgcagcggatcggtaagctg
aatgtgttggtggaggatgatgagcaggcaatccaaactgaacaaacttctactgaagaa
caaatgaacggcagcaatcgtattcgccttcgcatggaaggtgtcatgatcgaagatgac
acaacgcaaggtatccgtgtactgcctaccatgggtatggacgagccatggcgctatcgc
aacaaggcacaggtgcctatcggtgcagccgagggcggcttggtgggtggtttttacgcc
aaaggaagccatcggatcattgatatggacacctgcctgattcagcatgagcataacgat
gaagtggtcgccaaggtcaaggagatcggtagccatttcgggataagtgcttacaacgaa
gagacaggtcgcggacttctacgtcatgtggttgtgaagaaggctttccgtactggtgag
atgatgctcgttctcgtcacgaatggccgagacattccgtacaaagacgaatggattggt
agtatccgtgaagcgattccgcatgtagcgagtatctgccagaacgtgaacaagaaacag
accaacgtcatttttggcgatgagacccgcgtcctctggggccgtgatgtaatttatgat
tatatcggggatgtgcagtttgccatctcggcacgttcgttctaccaggtgaatccggtg
cagacggaagtgctatatgggaaaacggtagagtacgcaggactgagcggtaaagagacg
gtaattgacgcctattgcggcatcggaacaatctctcttttcctcgcgcaacatgcggat
caggtgtacggggtagagattgtacctgaagcgattgaagatgctcgcagcaatgcgctg
ctgaacgagatgaagaacgtgaagttcgaagttggtgcttccgaagatgtcattccacgc
tggaaagaacaaggcatcgaggccgacgtcatcgtcgtcgatccaccacggaagggctgc
gatccacgtttgctggatacgattctggagatgaagccggagcgcgtggtgtacgtgagc
tgtaatccgagcacgttggcacgtgatctgcgtgtgctagaggatggcgggtatcgcacg
gttgaggtaacaccggtggacatgttcccgcatacggtgcatgtggagagtgtagcgatg
ttggttagggtgtag
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