Paenibacillus marchantiae: PTQ21_15450
Help
Entry
PTQ21_15450 CDS
T08974
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTQ21_15450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmah03019
]
PTQ21_15450
03009 Ribosome biogenesis [BR:
pmah03009
]
PTQ21_15450
Enzymes [BR:
pmah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTQ21_15450
Messenger RNA biogenesis [BR:
pmah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTQ21_15450
Ribosome biogenesis [BR:
pmah03009
]
Prokaryotic type
rRNA helicases
PTQ21_15450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
CMS1
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
WDQ35532
LinkDB
All DBs
Position
3349664..3351256
Genome browser
AA seq
530 aa
AA seq
DB search
MTNLNFTDFNLEPLVLQAITELGFEEATPIQSKAIPLALEGRDLIGQAQTGTGKTAAFGI
PLISKITKSDEKIRALIMAPTRELAIQVAEEIEKLTRFKGLRSLPIYGGQDIVRQIRALK
RKPQIIIGTPGRLLDHINRKTIKLDDVQTVVLDEADEMLDMGFMEDIQSILKQVPDERQT
MLFSATMPPNIQKLAQQFLNNPEHISVIPKHVSAPLIDQSYIEVPERQKFEALSRLLDME
SPELAIVFGRTKRRVDELAEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATD
VAARGLDVSGVTHVVNFDLPQDPESYVHRIGRTGRAGKEGAAWSFVTPREIDHLHFIERV
TRHRIPRKPLPTMAEAVEGKQRLTAERLLEIVQSGELNEYKGIAIQMLEQYDSVQLLSAA
LKLLTGDKKDAQVDLTPEDPIRAKRRKPDVRSGGRKPSGYSGNRSSSGGGGSYNRDRNSS
GGGRGGYNRDRNSSGTGSGSGSREGGYNRDRKPRPSNNEGRRPAKDSSFE
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttaaatttcacagatttcaatcttgaaccactggtgctgcaagccatcact
gagctcgggtttgaagaagcaacaccgatccaatccaaagcgattcctttggcactcgaa
ggcagagatttgattggtcaagcacaaacaggtacgggtaaaacagctgcattcggtatt
ccgttgatcagcaaaatcactaaaagtgacgagaaaatccgcgccctcattatggcacct
acacgtgaacttgcaatccaagttgctgaagaaatcgaaaaactcactcgcttcaaaggt
ctgcgctccctgccaatctacggcggacaagatatcgttcgtcagattcgtgcattgaaa
agaaaaccacagattattattggtacacctggacgtctccttgaccacatcaaccgcaaa
acaatcaaacttgatgatgtacaaactgttgtattggatgaagcagatgaaatgctcgac
atgggtttcatggaggatattcaatccatcctgaaacaagttccagacgagcgccaaaca
atgctgttctcagcaacaatgcctcctaacattcaaaaattggcacaacaattcttgaac
aatcctgagcacatttctgtgatcccgaaacatgttagtgcaccattgattgaccaatct
tatatcgaagtacctgagcgtcaaaaattcgaagcacttagccgtttgttggatatggaa
tctcctgagctggcgatcgtattcggacgtacaaaacgtcgtgttgacgaattggctgaa
gctttgcaaaaacgtggatattctgcagacggtcttcatggtgacttgtcccagaatcaa
cgtgatgcggtaatgcgtaagttccgtgacggcagcattgacgttctcgttgcaacagac
gtggctgcacgtggtctcgatgtatccggcgtaactcacgttgtgaactttgaccttccg
caagatccggagagctatgttcaccgtatcggccgtacaggtcgtgcgggtaaagagggt
gctgcatggtctttcgttactccgcgtgagatcgaccacctgcactttatcgagcgtgta
acacgtcaccgtattccgcgcaaaccactgccaacaatggctgaggctgtagaaggaaaa
caacgtttgacagctgagcgtttgctcgaaatcgtacaatctggcgaactgaacgaatac
aaaggtatcgcgattcaaatgcttgagcaatatgattctgttcaactgttgtcagctgct
ctgaagctcctgacaggtgacaaaaaagatgctcaagttgatctgactcctgaagatccg
atccgtgcaaaacgtcgtaaaccggatgttcgctctggcggacgcaaaccatctggttac
agcggcaaccgcagcagcagtggtggtggcggtagttacaaccgtgatcgcaacagcagt
ggcggcggacgtggtggatacaaccgcgatcgtaacagcagtggaacaggaagtggaagt
ggaagcagagaaggtggttacaaccgtgaccgcaaaccgcgtccaagcaacaacgaagga
cgtcgtcctgccaaagattcttctttcgaataa
DBGET
integrated database retrieval system
