Paenibacillus marchantiae: PTQ21_16440
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Entry
PTQ21_16440 CDS
T08974
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pmah
Paenibacillus marchantiae
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pmah03032
]
PTQ21_16440 (topA)
03400 DNA repair and recombination proteins [BR:
pmah03400
]
PTQ21_16440 (topA)
Enzymes [BR:
pmah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PTQ21_16440 (topA)
DNA replication proteins [BR:
pmah03032
]
Prokaryotic type
DNA Topoisomerases
PTQ21_16440 (topA)
DNA repair and recombination proteins [BR:
pmah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PTQ21_16440 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_RPB9
Toprim_4
Auto_anti-p27
Toprim_3
GramPos_pilinD1
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
WDQ30047
LinkDB
All DBs
Position
3592080..3594170
Genome browser
AA seq
696 aa
AA seq
DB search
MADALVIVESPSKAKTIGKYLGSKFIVKASMGHVRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALELDETADCRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIILDREN
EINDFEPEEYWSITAKLTADGNPFEAKFHQLNGTKTELGSEAEVQAILKQIEGASFTVKE
VKEKERSRNPSAPFTTSSLQQEAARKLNFRASKTMSVAQQLYEGVDLGKEGTVGLITYMR
TDSTRIAASAQEEAKEYIIGKYGEPFAPETPRNYSKKAANAQDAHEAIRPTSILRDPDSI
KSFMSRDQFRLYKLVWERFIASQMSSAVLDTLSVDIAAGDTIFRAAGSKVRFQGFMKVYV
EGNDDGTTEEDRLLPPLKNGDVLENREIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELVIEQMEEFFPEILNVEFTANMEGDLDHVEEG
SEDWVKVLAEFYESFEKRLEFAEEEMKEIEIEDEVSDEICEKCGKPLVYKLGRFGKFLAC
SGFPDCRNTKPIIKDIGVTCPKCKEGHVVERRSKKGRIFYGCDKYPECDFVSWDRPSAKP
CPSCGSLMIEKRNKQGTRLQCTSCDHQEPVEEPEED
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcactcgtaatcgtggagtcgccctcaaaggcgaagacgatcggcaaatat
ttaggcagcaagttcatcgtaaaagcttcgatggggcatgtacgcgatttgccaaagagt
cagatcggcgttgaggtagagaatgattttaatccgaaatatattacgatccgcggtaaa
ggttcaattttgaaagaactgaaggatgcacgaaagaaagtgaaaaaagtgtatctcgca
gctgacccggatcgcgaaggtgaggctattgcttggcatttggcccatgcacttgaactg
gatgaaactgcggattgccgagtagtatttaatgaaattacgaaacaggctgtcaaagat
gcgttcaaaacgccgcgtaagatcaatatggatctggttaatgcgcagcaggccagacgt
attctggatcggcttgtaggatataaaattagtccgttattatggaagaaagtcaaaaaa
ggattgtccgctggccgcgttcagtctgtggccgtcaaaatcattttggatcgtgaaaat
gaaattaatgattttgaaccggaagagtactggagcattactgccaaactgacagcggac
ggaaatccgtttgaagccaagttccatcagttaaacggtaccaaaaccgaacttggtagt
gaggcagaagtgcaggccattttaaaacagatcgagggcgcttcttttacagtcaaagaa
gttaaagagaaggaacgcagccgtaacccttctgctccgtttacaacgagttccttgcag
caggaagccgcacgtaaattgaattttagagcttccaaaacgatgtctgtcgcccaacag
ctgtatgaaggcgtagacctcggaaaagaaggcacagtcggtctcattacgtatatgcgt
acggactctacccgaattgcagcatcggctcaggaagaagccaaggaatacattattggc
aagtatggtgagccatttgcaccagagacgcctagaaactattccaaaaaagcagccaat
gctcaagacgcgcatgaagcgattcgtccaacgtcgattttgcgtgatccggattccatt
aaatcgtttatgagtcgtgatcaattccggttgtacaaattggtttgggaacgttttata
gcgagccagatgtcatctgccgttctggatacactctccgtggacattgctgcaggagat
acgattttccgggcagcgggttcgaaggttcgtttccagggattcatgaaggtgtatgta
gaaggtaacgatgacggtacaacggaagaagatcgtctgctgcctccgctgaaaaatgga
gatgtgctggagaatcgggagatcgagccgaaacagcactttacacagccgccaccacgt
tatacggaagcaaggttggttaaaacacttgaggagctgggcatagggcgtccgagtaca
tatgcgccaacgctggagaccattcagaagcgcggatatgttgctattgaagagaagaaa
ttcatgccaacggaactgggcgaactggtcatcgaacagatggaggagttcttcccggag
atcctgaatgtggagtttaccgccaacatggaaggtgatcttgaccatgtggaggaaggg
tcggaggattgggtcaaagtactcgcagaattctacgaatcttttgagaaacggcttgag
tttgcagaagaagaaatgaaagaaatcgagattgaagatgaagtatcggatgaaatatgt
gagaagtgcggcaaaccgctcgtttataagctgggtcgtttcggcaagtttctcgcatgt
tccggatttccagattgccggaataccaaaccgatcatcaaggatatcggtgtaacctgt
ccgaagtgtaaggaagggcatgttgttgaacgccgcagtaaaaagggacgtattttttat
ggttgcgacaaatatcctgaatgtgattttgtatcatgggatagaccgtcagcgaaacca
tgtccaagttgtggatcactaatgattgagaaacggaacaaacagggaacacgattacag
tgtacttcatgtgatcatcaagagccggtagaggaaccggaagaagattga
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