Paenibacillus marchantiae: PTQ21_16620
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Entry
PTQ21_16620 CDS
T08974
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah02020
Two-component system
pmah02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PTQ21_16620
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTQ21_16620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmah03021
]
PTQ21_16620
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pmah02035
]
PTQ21_16620
Transcription machinery [BR:
pmah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTQ21_16620
Bacterial motility proteins [BR:
pmah02035
]
Flagellar system
Flagellar assembly proteins
Stator
PTQ21_16620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
PhyR_sigma-like
Sigma70_ECF
HTH_23
PCI
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
WDQ30080
LinkDB
All DBs
Position
3626379..3627167
Genome browser
AA seq
262 aa
AA seq
DB search
MNERKASHLNHADLWEKWKEQGDLEAKKSLIEKYLHIVNYVSGRLAVGLPKNVPKDDLES
NGVMGLIDALEKFDYERGLQFETYASWRVRGAILDGLRQGDWVPRSVREKAKRIEDAYQQ
LEQTYLRSVSDEEMSQYLDVSTKDFQHMLQEVAVMSLCSLEDPIREEESETRLSLMVDEK
AKNPDYKVNEFYLKEALVQGLEKLTVKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLDKQKDLLMRKD
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcgtaaagcttcacatttgaaccatgctgacttgtgggaaaagtggaaagaa
caaggcgatcttgaagccaagaaaagtttgatcgaaaaatatcttcatattgtaaactat
gtatccgggcgtttggctgttggtctgcccaaaaatgtcccgaaagatgatctggagagc
aatggagttatgggattgattgatgcgttggagaaatttgactatgaacgtggtcttcaa
tttgagacgtacgcatcctggcgggtgcgcggtgcaatccttgatggtttgcgtcaggga
gattgggttcctcgttctgtgcgtgagaaagcgaagcggattgaagatgcttaccagcaa
ctagagcagacatatttgcgctctgttagtgacgaagaaatgagtcaatatctcgacgtg
tctacgaaagactttcaacatatgcttcaggaagtggctgttatgtcgctttgctctctg
gaagacccgattcgtgaagaagagtctgagactcgactttcattaatggtcgatgaaaaa
gccaaaaacccggattataaagtaaatgaattctacttaaaagaagctttagtgcaaggg
cttgaaaaattgactgtcaaagagagaacggttgtttcacttttatattatgaagatctt
tctcttagcgagattgctgaggtaatgtctctttctccgtcacgtatctcgcagctgcac
tcaaaggccatcttacggttacgtggaacattggataaacagaaagacttgcttatgcgt
aaagattaa
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