Paenibacillus marchantiae: PTQ21_27580
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Entry
PTQ21_27580 CDS
T08974
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmah
Paenibacillus marchantiae
Pathway
pmah02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmah00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PTQ21_27580 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmah03021
]
PTQ21_27580 (rpoD)
Transcription machinery [BR:
pmah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PTQ21_27580 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
HTH_20
BLOC1_2
Motif
Other DBs
NCBI-ProteinID:
WDQ32100
LinkDB
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Position
complement(6103818..6104957)
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AA seq
379 aa
AA seq
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MANDQHTELETELTLDQVKDQLIESGKKRASLNYKEIIEKLSPFEQDAEQMDEFYEQLSD
LGIDVVNENDEEVTLRPSEDSENNTREGDDEFHFDDDLSLPPGIKINDPVRMYLKEIGRV
PLLSADDEVQLAKRIENGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLI
KAVEKFDHKKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQE
LGREPTPEEIAAEMDLSVEKVREITKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPAD
AAAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAK
ALRKLRHPSRSKRLKDFLE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatgatcagcatactgaactagaaacagaattgacgctggatcaggttaaagat
caattgattgaatcaggtaagaaaagagcttcgttgaactacaaggaaattatagaaaaa
ctctccccgtttgagcaagacgcagagcagatggatgagttctatgaacaactgagtgac
ctgggtattgatgtcgtgaacgaaaatgatgaagaggtaacccttcgccctagtgaagat
tccgagaacaacaccagagagggagacgatgaattccactttgatgatgatctgagcctt
ccaccaggaatcaaaatcaacgaccctgttcggatgtatctcaaagaaatcggtcgtgta
cctttgttgtctgcggatgacgaagtgcagttggccaaacggattgaaaacggggatgaa
gaagcgaaacgtcgtttggctgaagctaaccttcgtctcgtggtaagtatcgccaagcgt
tatgttggacgtggcatgttgttcctggatctgattcaggaaggtaacatgggtctgatc
aaagcggttgagaaattcgaccacaaaaagggttataaattcagtacgtatgcgacatgg
tggattcgccaagcgatcacccgtgcgattgcggaccaagcacgtacgattcgtattcct
gtgcacatggtggagacgattaataagctgatccgggtatcccgtcagctgttgcaggaa
cttgggcgtgaaccgacaccggaagaaatcgctgccgagatggatctgagtgtggaaaaa
gttcgtgagattacgaagattgctcaggaaccggtttccctggaaacaccgattggtgag
gaagatgattcccatctgggtgatttcatcgaggatcaggaagcattggctccggcggat
gctgctgcttatgagttgctaaaagaacagctcgaagatgtcctggatacattgactgag
cgtgaagagaacgtgcttcgtctgcgttttggtctggacgatggacgtacaagaacgctg
gaagaagtgggcaaggtatttggtgttacgcgtgagcgtattcgtcaaattgaagccaaa
gctcttcgcaaattgcgtcaccctagccgcagtaaacggcttaaagatttcctcgaataa
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