Paraphotobacterium marinum: CF386_00485
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Entry
CF386_00485 CDS
T05093
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF386_00485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmai03019
]
CF386_00485
03009 Ribosome biogenesis [BR:
pmai03009
]
CF386_00485
Enzymes [BR:
pmai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CF386_00485
Messenger RNA biogenesis [BR:
pmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CF386_00485
Ribosome biogenesis [BR:
pmai03009
]
Prokaryotic type
rRNA processing factors
CF386_00485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ASK77672
UniProt:
A0A220VBY0
LinkDB
All DBs
Position
large:85888..87885
Genome browser
AA seq
665 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQKLYDLDIENAGYESKKANIYKGIVTRVEPSLEAAFVNY
GADRHGFLPLKEISKDNFPENYTYQGRPNIKDILSEGQELIIQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGNERIALKDALNELRLPLGMGLIVRTAGVGKSSEEL
SWDLNILINHWNAIKEASKNHTAPFLIHQESNVIVRAIRDYLRRDIGEVIVDSPKFFKKT
KEHVALVRPDFISKIKRYNNEVPLFTHYQIENQIESAFQREVNLPSGGSIVIDPTEALTS
IDINSARSTKGVDIEETALQTNLEASEEIARQLRLRDLGGLVVIDYIDMTPLKNQREVEN
RLKDAVQIDRARIQIGRISKFGLLEMSRQRLSPSLAEASHHVCPRCKGTGVVRDNNSLSL
SILRLLEEEAIKEKTSQVVAVVPTVIASYLLNEKRKSILHIEKLHNVKLVISPTSSFETP
NFEIFRIRTGEENNVLSYKIPNYLEQFNREENLESSLENHNSKVKEEPVLNGIAHTPDSG
AINKSDSGNIFSKFLKKLSNIFQANTQPVNNSKVTTDNLSPKVNRNTNVRKSNNRSDSPI
KKKVVPKHSELEIQNKKNIPEKSKDTQFQKNKPTSTNKTKERREQRKLDKKIRVEKKLKL
QNKKK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgttgattaacgcaactcaaaaagaagagttgcgagtcgcattagttgat
ggccaaaaactatacgacttagatattgaaaatgctggatatgaatcaaaaaaagcaaac
atttataaaggaattgtaactagagtcgagcctagtttagaagcagcttttgtaaattat
ggagccgatagacatggcttcttaccccttaaagaaatatcaaaagataattttccagaa
aattacacttatcaagggagaccgaatataaaagatattttatcagaaggtcaagaactc
atcatacaagttgataaggaagaaagaggtaacaaaggtgcagcactaacaacatttata
tctctagctggtagctatttagttttaatgcccaataatcctcgcgctgggggcatatca
agaagaattgagggtaatgaaagaatcgcattgaaagatgccttaaatgaattacgactt
cctctaggaatgggtttaattgttagaactgctggagttggaaaatcttctgaagagttg
tcatgggatttaaatatcttaataaatcactggaatgcaattaaagaagcttctaaaaat
cacacagcaccatttctcatacatcaagaaagtaacgtaattgttcgagcgattcgagat
tatttgagaagagatattggcgaagtaattgttgatagcccaaaatttttcaaaaaaaca
aaggaacatgttgcacttgtcagaccagactttatatcaaaaattaaaagatataacaat
gaagttcctctgtttactcattatcaaattgaaaatcaaatcgaatctgctttccaaaga
gaagttaacctaccgtctggtggctcaattgttatagaccctacagaagcacttacctca
atagatattaattcagcacgatcgactaagggtgttgatattgaagaaacagcacttcaa
acaaatctagaggcttctgaagaaatagctcgccagcttagattgagagatttgggtggt
ttggttgtcattgattacattgatatgacacctttaaaaaatcaaagagaagtggaaaat
agattaaaagatgctgtacaaatagaccgagctagaatccaaattggacgaatctctaaa
tttggcttattagagatgtcaagacaacgcctgagtccttctttagctgaagcaagtcac
catgtatgtccaagatgcaaaggcacaggtgttgttcgggataataattcattatcttta
tcaattctacgattactagaagaagaagctattaaagaaaaaacatcccaggttgttgca
gtcgttccaactgtaattgcttcatatttattaaatgaaaaaagaaaatctattctacat
attgaaaaacttcataatgttaaactagtaatatctccaacttcttcatttgaaacacca
aattttgaaattttcagaataagaacgggagaagaaaataatgttttatcttacaaaatc
cctaactatttagaacaatttaaccgcgaagaaaatcttgaaagttcacttgaaaatcat
aactcaaaagtgaaagaagaacctgttctcaatggcattgctcatacccctgattctggt
gctattaataagagtgattcaggcaatatatttagcaagttcttaaaaaaattatccaat
atttttcaagcgaatactcaaccagtaaataattctaaagtcactactgacaacctatca
cctaaagttaatagaaatacgaatgtaaggaaatctaataatagatcagactccccaatt
aagaaaaaagttgttccaaaacatagcgagttagagattcaaaataagaaaaatattcct
gaaaaaagtaaagacacccagtttcagaaaaataagcctacctctaccaataaaacaaaa
gaaaggcgcgaacaaagaaagctggataaaaaaattcgtgtagaaaaaaagttgaaatta
caaaacaagaaaaaataa
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