Paraphotobacterium marinum: CF386_02405
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Entry
CF386_02405 CDS
T05093
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CF386_02405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmai03021
]
CF386_02405
03400 DNA repair and recombination proteins [BR:
pmai03400
]
CF386_02405
Enzymes [BR:
pmai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CF386_02405
Transcription machinery [BR:
pmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CF386_02405
DNA repair and recombination proteins [BR:
pmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CF386_02405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
ASK77976
UniProt:
A0A220VCM2
LinkDB
All DBs
Position
large:complement(449168..450157)
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AA seq
329 aa
AA seq
DB search
MQSSVTEFLKPHLVDIEQLNVTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSTKEGIQEDILEILLNLKGLAVKLEGKDEVTITLSKSGVGPVLAGDISHDGD
VEIINPEHVICHITDSNIDLNMKIKVERGRGYIPASARVHNEDDERPLGRLLVDATFSPI
DRIAYNVEAARVEQRTDLDKLVIDMETNGTLDPEEAIRKAATILAEQLDAFVDLRDIRVP
EEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAEE
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcagagttctgttacagaatttctaaaaccacatttagttgatattgagcagcttaat
gtgacacatgctaaagttacacttgagcctctagaacgtggctttggtcatactttaggt
aatgctttgcgccgaattttattatcttcaatgccaggttgtgctgtaactgaagttgaa
attgatggcgttttacatgaatatagtaccaaagaaggtatacaagaagatattcttgaa
atacttttaaacttaaagggacttgcagtaaaacttgaaggtaaagatgaagtaacaatt
actttaagtaaatctggtgtgggtccggtacttgctggtgatatttctcacgatggtgat
gttgaaattatcaatccagagcatgtaatttgtcatattactgatagcaatatcgattta
aatatgaaaattaaggtagaacgtggaagaggttatattccagcatcagcacgtgttcat
aacgaagatgatgagcgtccattgggtcgtttgttagttgatgcaacttttagccctatt
gatcgtatagcttataatgttgaagctgctcgtgttgaacaacgaacagatcttgataag
ttagttattgatatggaaactaatggtacacttgaccctgaagaagcaattagaaaagct
gcaactatacttgcagagcagcttgatgcatttgttgatttgagggatatccgagtacca
gaagagaaagaggaaaaacctgaatttgatccaattctccttcgtcccgtcgatgatttg
gaattaactgtacgctctgctaattgtttaaaagcagaagcgatacattatattggtgat
ttagttcaacgtactgaagttgagttactaaaaacaccaaatttaggtaaaaaatctttg
actgagattaaagatgttttagcttcacgtgggttgtctctaggtatgcgcctagaaaac
tggccacccgcatcaattgctgaagaatag
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