Paraphotobacterium marinum: CF386_03935
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Entry
CF386_03935 CDS
T05093
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CF386_03935 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmai03021
]
CF386_03935 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmai03400
]
CF386_03935 (rpoC)
Enzymes [BR:
pmai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CF386_03935 (rpoC)
Transcription machinery [BR:
pmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CF386_03935 (rpoC)
DNA repair and recombination proteins [BR:
pmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CF386_03935 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASK78233
UniProt:
A0A220VE87
LinkDB
All DBs
Position
large:729187..733410
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQHKNEEFDAIKIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDMPLRDIERVLYFESYIVIEPGMTNLERGQLLSEEQYLDALEEWGDEFDAKM
GAEAVKSLLLNMDLNAEIDLMREELEETNSETKRKKLTKRIKLIEAFVQSGNNPEWMILD
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLENKGFATTIKAAKKMVEREEPVVWDILDDVIREHP
VLLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCAAYNADFDGDQMAVHLPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREKINAKGEGLYLSGPEEAEKAYRTG
NAEIHARVKVRITEYTTNSDGTFDEGTVKLIDTTIGRAMLWSIVPKGLEFSLINQTLGKK
QISLLLNTCYRVLGLKDTVIFADQIMYTGFAYAARSGASVGIDDMVVPDAKNELIDSAHA
EVAEIQEQFQSGLVTAGERYNKVIDIWAATNEQVTKAMMDNLSSETVTNKEGEEETQKSF
NSVYMMADSGARGSQTQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVVTSDDCGTTEGIVMMPLIEGGEVKEPLFERV
LGRVLAEDVLIPGTEKVLLERNTLLDEKLCELLEENSVDKVKVRSVVTCENDHGCCKLCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAENNIQIKNNGTLN
LHNAKFVINKDNHLVITSRASELTIIDEFGRTKESYKLPYGTILSKKDKDSVKAGDIVAN
WDPHTNPIITEVDGKVEFVDMIDGITVQRQTDDLTGLSSLVILDAAQRTGSAKDMRPLIK
LLDKNGKDILIPGTDIPAQYFLPGKAIVQLEDGADVNIGDVLCRIPQESGGTKDITGGLP
RVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLIITPKDGDSYEEMIPKHRQLNVFE
GEKVEKGDVISDGPETPHDILRLRGVNAVSEYIVNEVQDVYRLQGVKINDKHIETIVRQM
LRKVTIINSGDSEFLSGEQVEYSNVMIANRALAKEDKQQATFQRELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKQDELRGLKENVIVGRLIPAGTGFAYHQDRINKHNSNDEKS
LDEPSVDVEQASQDLAALLNANLNDSK
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaaatttcttaaagctcagcacaaaaatgaagagtttgatgcaata
aaaattggtttagcttctccagaaatgattcgttcttggtctttcggcgaagtcaaaaaa
cctgagactattaactatagaacatttaaaccagaaagagatgggcttttctgtgctaga
atttttggccctataaaagattatgaatgtctctgtggtaaatataagcgattgaaacat
agaggcgttatttgtgaaaaatgtggagtcgaagtaacgcaaactaaagttcgtagagac
cgtatgggtcatattgaactagcttcgcctgtagctcatatatggtttttaaaatcatta
ccatctaggattggactccttatggatatgcctcttagagatattgaacgtgtattgtat
tttgagtcctatatagtcatcgagcccggcatgacaaacttggagagaggtcaactcctg
tctgaagaacaataccttgatgcattagaagaatggggtgatgagtttgatgctaaaatg
ggtgcagaggcagttaaatcattattgttaaatatggatttaaatgctgaaattgatcta
atgagagaagagctcgaagaaaccaattcagaaactaagagaaaaaagttaactaagcgt
attaaattaatagaagcttttgttcaatcaggtaataatcctgaatggatgatacttgac
gtgcttcctgttcttccgcctgacttgagacccctagtacctcttgatggtggtagattt
gcgacttctgatttaaatgatttatatcgccgagttattaaccgaaacaatcgattaaaa
agactcctagatttatcagcacctgatataattgttcgaaacgaaaaaagaatgttacaa
gagtccgtcgatgctcttttagataatggacgaagaggaagagcgattacaggttctaat
aaaagacctctcaagtctcttgcagatatgattaaagggaaacaaggtcgatttagacag
aatttactcgggaaacgagttgattactctggtcgttctgttattacagtaggtccatac
ttgagattacatcagtgtggtttacctaaaaaaatggctttagaattgtttaaaccattt
atttatggaaaattagaaaataaaggctttgctactacgattaaagcagccaaaaaaatg
gtagagagagaagagcctgttgtttgggatattcttgatgatgtaattagagagcatcca
gttttgttaaatagagctccaacacttcatagacttggtattcaagcatttgaacctgtt
ttagttgaaggaaaagctatacaacttcatcctcttgtttgtgctgcttacaacgctgac
tttgatggtgatcagatggctgtgcatttaccattaactttagaggcacaattagaagct
agagctctaatgatgtcaacaaataatatattatctccagcaaacggagaaccgattata
gtaccgtcacaagatgttgtacttggtttgtattatatgactagagaaaaaataaatgcg
aaaggtgaaggtttgtatttatctggtccagaagaggctgaaaaagcatatcgtacaggc
aatgctgaaattcatgctagagttaaagtacgcatcactgaatatactacaaattcggat
ggtacttttgatgaaggaactgttaagttaattgatacgactattggacgagctatgtta
tggtctatagttcctaaaggtctagagttcagcttgataaaccaaacgttagggaaaaaa
caaatatctttactacttaatacttgttatcgagtacttggacttaaggatacagtaatt
tttgctgatcagataatgtatactggttttgcatacgcggctagatctggcgcatctgta
ggtattgatgatatggtagttccagatgctaaaaatgaattaattgattcagctcatgca
gaagttgctgaaatacaagaacaattccaatcaggtcttgtgacagcaggtgaacgatac
aataaagttattgatatttgggcagctactaatgaacaggttactaaggcaatgatggat
aacctatcgtctgaaacagtgactaataaagaaggtgaagaagagactcaaaaatcattt
aatagtgtttatatgatggctgattctggtgctcgtggttctcaaactcagattcgtcaa
ctagcaggtatgcgtggtcttatggcaagacctgatggttcaattattgaaacgcctatt
actgcaaactttagggaaggtttgaatgtactacaatactttatttccactcacggtgct
cgtaaaggacttgcagatacagctttaaagacagcaaactcgggatatcttactagaaga
cttgttgatgtagctcaagatgttgtagttactagcgatgactgtggtacaactgagggt
atcgttatgatgccattaattgaaggtggcgaagttaaagaacccctatttgaaagagtt
cttggtcgtgttttagcagaagatgttctgatacctggcacagaaaaagtgttgctagaa
agaaatactcttttagatgaaaaactatgtgagttattagaagaaaactctgttgataaa
gttaaggtaagatcggttgtgacttgtgaaaatgaccatggctgttgtaagttatgttat
ggtcgtgatttagctagaggtcacctaatcaatcagggtgaagcagttggtgtaattgct
gcacagtcaattggagaaccaggaacacagcttacgatgcgtactttccacattggtgga
gcagcatctcgagcagcggcggaaaataatatccaaataaaaaataatggtactttaaat
ttacataatgctaaatttgtaattaataaagataatcatttagttataacttccagagca
tctgaattaactattattgacgaatttggacgaactaaggaaagctataaacttccatac
ggcactattttatcgaaaaaagataaagattcagtcaaagctggtgacattgttgctaat
tgggatccgcatacaaacccaataataactgaggttgatggtaaagtagaatttgtggat
atgattgatggtataactgttcaacgtcaaacagatgatttaacaggtctttcttcacta
gttattcttgatgcagcacagagaacaggttctgcaaaagatatgcgcccattaattaaa
ttacttgataaaaatggtaaggacatacttattcctggtactgatattccagctcaatat
ttcttgcctggaaaagctattgttcaattggaagatggtgcagatgtgaacattggtgat
gttttatgtcgtatacctcaagagtcaggaggtacgaaagatatcactggtggtttacca
agagttgctgatttattcgaagctaggaagccgaaagaaccagctatactagcagaaatt
tctggaacagtatcatttggtaaggaaactaaaggtaaacgacgattaattattacccct
aaagatggtgactcatacgaggaaatgattcctaaacatcgccagttgaatgtttttgag
ggtgagaaagttgagaaaggtgatgtcatttcagatggcccagaaactccacatgatatt
ttaagattaagaggagttaacgcagtatcagagtacattgttaatgaagtacaagatgtt
tatagattacaaggtgtgaagattaatgataaacatatcgaaacaattgtaaggcaaatg
cttcgaaaagtaactattataaactctggcgattctgagttccttagcggcgaacaagtt
gagtattcaaacgttatgattgctaatagagcgcttgctaaagaagataaacagcaggct
acttttcagcgagaactcttgggtattacaaaagcatctttggcgactgaatctttcatt
tcagcagcatcattccaagaaacaactcgagttttaacagaagcagcagtttcaggaaaa
caagatgaactgagaggtttgaaagaaaatgttattgttggtagattgataccggctggt
actggatttgcgtatcaccaggatcgaattaacaaacataatagtaatgatgagaaaagc
cttgatgaacctagtgttgatgttgaacaggcatcacaagacttagcggcactgttaaat
gctaaccttaatgattctaagtaa
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integrated database retrieval system
