Paraphotobacterium marinum: CF386_12120
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Entry
CF386_12120 CDS
T05093
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmai
Paraphotobacterium marinum
Pathway
pmai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF386_12120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmai03019
]
CF386_12120
03009 Ribosome biogenesis [BR:
pmai03009
]
CF386_12120
Enzymes [BR:
pmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CF386_12120
Messenger RNA biogenesis [BR:
pmai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CF386_12120
Ribosome biogenesis [BR:
pmai03009
]
Prokaryotic type
rRNA helicases
CF386_12120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
HEM4
Motif
Other DBs
NCBI-ProteinID:
ASK79781
UniProt:
A0A220VHK0
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All DBs
Position
small:1063424..1065205
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AA seq
593 aa
AA seq
DB search
MSNSIERFDQLNLKSSILSSLEDINFINPTPIQAASIPPLLDGNDVLGKAQTGTGKTAAF
SLPILNKINFSQKKPQAIIMAPTRELAIQVAAEIKTLGQNIEKLFVTEIYGGASIVDQMK
VLKKNPQIVVGTPGRVKDLISRNKLHLDEVETFVLDEADEMLKMGFVDDVTWIMEQAPNS
AQRVLFSATMPPVVKDIVNKFLRKPVKIDVAGENKTVSKVDQKFWVVKGVDKDEALSRLL
ETENPDASIIFVRTKQDTEKLSDHLTRKGFKVSALHGDIPQSLRERTVEHIKKGVIDILV
ATDVVARGLDVPRISHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILFVRTNQLKMLRTI
ERVTKSKMSEISLPLRDDVAKARLNKLATDIEQEKEFKYLDKFIALKDQLKEKIQISDDE
LCAILLRKVQGTRPLFYQGPDPMIAALERDQKRNERRKKGEKTKSGDGFKGDWDTYQLQV
GREHGVQVKDIVGALANELDLSKDLIGGIKLTPRHTLVQLPKNLQDATVTHLKKLKIRQN
KVNAVVVYDDTMNENRKSRRNSGHRGRSRNEQGSRPERKFDRNRASKNRVKNK
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacagtatagaacgattcgatcaattaaacttgaagagctcaattttgagttct
ttagaagacatcaattttataaatccaacaccaatccaagctgcatcgatcccccctctt
ttagatggtaatgatgttctcggtaaagctcaaaccggtacaggaaaaacagccgccttt
tcgctacctattttaaataaaataaacttttcacaaaaaaaaccacaagcaattatcatg
gcacctactagagagttagctattcaagttgccgcagaaatcaaaacgttaggtcaaaat
attgaaaaattgtttgtaacggaaatctatggaggagcttcaattgttgatcaaatgaag
gttctgaaaaaaaatcctcaaattgttgttggaactccaggtagagtaaaggatttgatt
tcacgtaataaacttcacttggatgaagtagagacttttgtattagatgaagcggacgaa
atgctaaaaatgggttttgtggatgatgtgacttggattatggagcaagcacctaactca
gcacaacgagttttattttcagcgacaatgcctccagtggtaaaagacattgttaataaa
tttttaagaaaaccggttaagattgatgttgctggtgaaaataaaacagtatctaaggta
gaccaaaagttttgggttgtgaaaggtgttgataaggatgaagctctttcaaggcttctt
gaaactgaaaatcctgatgcgtctatcatttttgtgagaacaaagcaagatacggaaaaa
ctatctgatcacctaactagaaagggctttaaggtttccgctcttcatggagatattcct
caatctttaagagaacgaactgtagagcatatcaagaaaggtgttattgatatattagtg
gcgactgatgtggtagcacgtggacttgatgtgccgagaataagccatgtttttaattat
gatataccttttgatgttgaatcttatattcatcgaatcgggagaacaggaagagcaggg
cgttcaggaaaagcaattctttttgttagaaccaatcaattaaaaatgctaagaactatt
gaaagagtaaccaaatcaaaaatgagtgaaatctcacttcctcttagagatgacgttgct
aaagctagattaaacaaacttgctactgatattgaacaagaaaaagagtttaaatattta
gataaatttatagcattaaaagatcaacttaaagagaagattcaaattagtgatgatgaa
ttatgcgcaattttattgagaaaggttcaaggcaccagaccacttttttatcaagggcct
gatcctatgattgctgctcttgaaagagatcaaaagagaaatgaaagaaggaaaaaaggt
gagaaaacaaaaagtggagatggatttaagggagattgggatacttatcagttgcaagta
ggaagagaacatggtgttcaggttaaggatattgtgggagctcttgcaaatgagcttgat
ttatcaaaggatttaattgggggtattaaacttacaccacgtcatactttagttcaactg
ccaaagaatttacaagatgcgacagtaactcatttgaaaaagttaaaaattagacaaaac
aaggtcaatgctgttgtagtttatgatgatacaatgaatgaaaatagaaaaagtagacga
aattcagggcacagaggtcgttcaagaaatgaacaaggcagtagaccagaaagaaagttc
gatagaaatcgagcttctaaaaatcgggtaaaaaataaataa
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