Paramixta manurensis: PMPD1_0521
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Entry
PMPD1_0521 CDS
T10259
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmak Paramixta manurensis
Pathway
pmak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMPD1_0521
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmak03019
]
PMPD1_0521
03016 Transfer RNA biogenesis [BR:
pmak03016
]
PMPD1_0521
Enzymes [BR:
pmak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PMPD1_0521
Messenger RNA biogenesis [BR:
pmak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PMPD1_0521
Transfer RNA biogenesis [BR:
pmak03016
]
Prokaryotic type
tRNA degradation factors
PMPD1_0521
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_2
OB_RRP5_4th
KH_2
aRib
S1_RRP5
KH-I_KHDC4-BBP
UPF0181
KH_SLS1_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
QKJ85496
UniProt:
A0A6M8U4G1
LinkDB
All DBs
Position
533686..535815
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AA seq
709 aa
AA seq
DB search
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLT
VNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSV
NPQVNPDIVAMIGASAALSLSGIPFNGPIGSARVGYINDQYVLNPTVDEIKQSKLDLVVA
GTQGAVLMVESEADVLSEEQMLGAVVFGHEQQQVVIENINSLVAEAGKPRWEWQPEAVNQ
TLHSRIAALAESRLSDAYRITEKQERYAQVDVIKSETIAALLAEDASLDDAEISDILHAI
EKNVVRTRVLNGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTAR
DAQNLDELLGERTDNFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKLEE
FPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDKYVVLSD
ILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARMHILGVMEQA
ISTPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAAT
DGDKAKHAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVE
KVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPEAAAVVNPEAE
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
ttgctgaacccgatcgtacgtaaatttcaatatggtcagcataccgtaacattagaaacc
ggtatgatggcgcgccaggcaacggctgccgtaatggtaagcatggacgacaccgctgtg
ttcgttaccgttgttggtcagaaaaaagcgaaacccggccaggattttttcccgctgacc
gttaactatcaagaacgtacctatgccgctggccgtatcccgggcagcttcttccgtcgt
gaaggccgtccgagcgaaggcgaaacgctgatcgcgcgtttgattgaccgtccggttcgt
ccgctgttcccggaaggctttgtcaatgaagtgcaagttatcgccactgtggtatcggta
aacccacaggttaacccggatatcgtggcgatgatcggcgcttctgcggcgctgagtctg
tctggtattccgtttaacggtccgattggttccgcacgcgtcggttatatcaatgaccag
tatgtactgaacccgaccgttgatgaaattaagcaaagcaaactggatctggtggttgcc
ggtacgcagggcgcggtgctgatggtggaatctgaagcggacgtgctgagcgaagagcaa
atgctcggcgcagtggtgttcggtcacgagcagcagcaggtggttattgagaacattaac
tcgctggtagccgaagcgggcaaaccgcgttgggaatggcagccagaggccgtgaatcaa
acgctgcattcgcgtattgccgcattggcggaatcgcgtttgagcgatgcttatcgcatc
acggaaaaacaagagcgttacgctcaggttgatgttattaaatccgaaaccatcgccgcc
ctgttggcggaggatgcgtctctggatgacgctgaaatcagcgatattctgcacgcgatt
gaaaagaacgtggttcgtacccgtgttctgaatggcgagccgcgtattgatggccgcgaa
aaggatatgatccgtggcctggatgtgcgtactggcgtgttgccgcgtactcatggttcc
gcgctgtttacgcgtggcgaaacgcaagcattagtgaccgcgacgctgggcaccgcgcgt
gatgcgcagaacctggatgagctgttaggcgaacgtactgacaacttcctgttccactac
aacttccctccgtattccgttggtgaaaccgggatggtagggtcgccgaagcgtcgtgaa
attggtcacggccgtctggcgaaacgtggcgtattggcgatgatgccgaaactggaagaa
tttccgtacaccgtacgtgtggtatcggaaattactgagtccaacggttcctcttcaatg
gcttcggtgtgcggcgcttctttggcgctgatggatgccggtgtgccgatcaaagccgcc
gtggcgggtatcgcaatgggtctggtcaaagagggcgacaaatacgtcgtgctgtctgat
attctcggcgacgaagaccacctcggcgatatggactttaaagtagctggtagccgtgat
gggattaccgcgctgcagatggatatcaaaatcgaaggtatcacgcgcgaaatcatgcag
gttgcgctgaatcaggcgaagggtgcgcgtatgcatatcctgggcgtgatggagcaggcg
atcagcacgccgcgtggcgatatctctgagtttgcgccgcgtattcataccattaagatc
aatccggacaagatcaaagatgtgattggtaaaggtggttcggtcatccgtgcgttgact
gaagaaaccggcaccaccattgagatcgaagacgacggtacggtgaaaatcgccgcaacc
gacggtgataaagcgaagcatgcgattcgtcgtatcgaagaaatcaccgctgagatcgaa
gtgggacgtatctataacggtaaagtaacccgtatcgttgatttcggtgcctttgtggct
atcggcggcggtaaagagggcctggtacatatttctcagatcgcagacaaacgcgttgag
aaagtgactgactatctgcaaatgggtcaggaagtaccggtcaaggtactggaagtagat
cgtcagggacgcgttcgtttaagcatcaaagaagcgacagagcaaacccagccggaagca
gcggctgtggttaatcctgaagcggagtaa
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