Paramixta manurensis: PMPD1_1166
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Entry
PMPD1_1166 CDS
T10259
Name
(GenBank) Exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pmak Paramixta manurensis
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmak03400
]
PMPD1_1166
DNA repair and recombination proteins [BR:
pmak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMPD1_1166
Archaeal homologous recombinant proteins
PMPD1_1166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
SMC_N
ABC_tran
nSTAND3
cobW
AAA_15
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QKJ86131
UniProt:
A0A6M8UB61
LinkDB
All DBs
Position
complement(1213370..1217065)
Genome browser
AA seq
1231 aa
AA seq
DB search
MKILTLRFKNLNSLKGEWKIDFTAEPFASNGLFAITGPTGAGKTTILDAICLALYHETSR
LGKISQTQNELITRDTAECLAEVEFEIKGQAWRAFWSQNRARGAIDGNLQAPRVELARCA
DNVIVADKVKDKLEMLAALTGLDFERFTKSMMLSQGQFAAFLNADAGERAALLEELTGTE
IYGRLSAEVFEQHKASRITLDNLRAQAAGMALLDEETRHGLQQKIDALSAEEQALTQSLA
EAQRQQQWLTQWQKILQDQQQAEQAWQQADSAWRLAKDDHEKLARAEPAEKLRPQWQACQ
HYQQELAQVEQQRQQLNAQLTLRQSELAALAERQAQAESERLQTAQHRQQQETLIAETVI
PLEQHLATLHQQITGLEQTRQEQQRVQQQQQTTRLQQQSDIAAVEQQMQTHQHWRQQHAT
VAQWGESLRLWQERFSWLQQSEQALTVQQQKEKQLVEQLAQQAQAVKQIAEGLVPLQSQQ
DSAQQHWLQAEQTLTDLQQRQPEAQLRALLERLTQQRPLRQRLALIAPHYHRLSQQQQKL
HASRAESLRHSQQRQQQLDAQRQSWRERHQHRVDLEKRVELEQRIVTLEQERARLETGQP
CPLCGSTEHPAIAEYQAVTVSENQQRLEQLRQQEDALRLQGITSAEQLKTFQAHSEQARQ
ELQTLADEQAKLEAQWQEAASALALDLAPQQQEELELWLQQQEQQERETQALLQQHDAAL
RASQQAKAALNEHQQAVQKQQQAAQLARQQQENVQQSLETVKQQYQSDVARSQQLRETLS
QELARHQLVLPQSEELDSWLQARQAEWRQWQESEQALAKLTPQLAALQSKQDALESESAA
ALPRMAETEKTLANAQQQQQALQAQRQQLMGDQSLAEVRQHLQQQTERAEASYLAIQQQW
QAAQNQINTLTGQHKSLNEQLRARQKKATEAQQQLAAALEHSAFADENALLAALLSEEES
QRLKSEQRAREQHLHQAETVKAQIASALQQHLAQRPVALNQEASQLAAQAETLRQQVREN
AQQQGQVRQQLDSDSERRQQQQSLLQQIVASEERTEEWGYLNHLIGSATGDKFRKFAQGL
TLDHLVWLANNQLARLHGRYLLQRKTQEALELQVVDTWQADATRDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDADTLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSKLESPTELSAREIL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaagattctgacgctgcgttttaaaaacctcaactcgctgaaaggtgagtggaaaatc
gattttaccgccgagcccttcgccagtaatggcttgtttgccattaccgggccgaccggc
gcggggaagaccacgattcttgacgccatttgtctggcgctctatcacgagacatcgcgc
ctcgggaagatctcacaaacgcaaaatgagttgatcacgcgtgataccgcggagtgtctg
gcggaagttgagtttgagattaaggggcaagcctggcgcgcgttttggagccaaaatcgc
gcccgcggcgctattgacggtaatctgcaggcgccgcgcgttgagctggcgcgttgcgca
gacaacgtgattgtggccgataaagtgaaggataagctggaaatgttggcggccctcacc
ggccttgattttgagcgcttcaccaaatcaatgatgctgtctcaggggcaatttgccgcg
tttttgaatgcagacgccggggaacgcgcggcattgctggaagagctaaccggaacggag
atttatggccgtctctcagccgaggtgtttgagcaacataaagccagccgtattacgctg
gataatttacgcgcacaagccgccgggatggcgctcctggacgaagagactcgccacgga
ttacaacaaaaaatcgacgccctgagcgcagaagagcaagcgcttacacaatcgttagcg
gaagcccagcggcagcaacaatggctcacccagtggcaaaaaattctgcaggatcaacag
caggcggagcaggcatggcaacaagccgatagcgcctggcgcctggcgaaggacgatcat
gaaaaactggcgcgcgctgagccggcagaaaaattgcgcccgcagtggcaagcctgccag
cactaccaacaagaacttgcacaggttgaacagcaacggcaacaacttaatgcacagctc
acgctacggcagtcagaactggcggcgctcgccgaacgccaggcacaagcggaaagcgaa
cgcttgcaaaccgcccaacatcgccagcagcaggaaacgttgatcgccgaaaccgtcatt
ccgcttgagcaacatctcgctacgttgcaccagcaaattaccgggctggaacaaacccgg
caagagcaacagcgagtacagcaacaacagcaaaccacccggttgcagcaacaaagtgac
atcgccgcggtggagcaacaaatgcaaacccaccaacactggcgtcagcagcacgcgacg
gttgcgcagtggggcgagtcattacggctttggcaggagcggtttagctggctacagcaa
agcgagcaagcgcttactgtacaacaacaaaaagaaaagcagcttgttgagcagctagcg
caacaggcgcaggcggtgaaacagatcgccgaaggtctggtgccgttgcagtctcaacaa
gatagcgcacagcagcactggctacaggcggagcaaacgcttactgatttacaacaacgg
cagcccgaagcacagcttcgcgctcttctcgaacgtttgacgcagcagcgcccgctgcgc
caacgtttggccttaatcgctccgcattatcatcgactgagccaacagcaacaaaaacta
cacgccagccgtgctgaatcgctacgccatagccagcaacggcagcagcagttggacgcg
caacgccaaagttggcgcgagaggcaccaacatcgggtggatctcgaaaagcgtgtagag
ctggaacaacgtatcgtcactctggaacaggaacgcgcgcggcttgaaaccggccaaccc
tgtcctctgtgcggctcaaccgagcatcccgctattgctgagtatcaggccgttaccgtg
tcagaaaaccagcagcggcttgaacaactgcgccagcaagaagatgccctgcgtctacag
ggcatcaccagcgcagaacaactaaaaacctttcaggcgcacagtgaacaagcccggcaa
gagctgcaaaccctggccgatgagcaagccaaactggaagcacaatggcaggaagccgcc
agcgcgttagcgttagacttagcgccgcaacagcaggaggaattggagctttggctacaa
cagcaagagcaacaagaacgcgaaacacaggccctgttgcaacagcatgacgccgcccta
cgcgccagccaacaggccaaagcggcgctgaatgaacatcagcaagcggtgcaaaaacaa
caacaggccgcccaactcgcgcgtcaacaacaggaaaacgtgcaacagtcgcttgaaacc
gtaaaacagcaatatcagagtgacgttgcccgctcgcagcaactgcgtgaaacgctgagc
caggagttagcccggcatcagcttgttttgccgcaaagcgaggagctggatagctggcta
caggcccgtcaggcagaatggcggcagtggcaagagagtgagcaagcgcttgctaaactt
acgccacagttagcggcgcttcaaagtaagcaagacgcgctggagagcgaatcggccgcc
gccctgccccgcatggctgaaaccgaaaaaacgttggcaaatgcgcagcaacagcagcag
gcgttgcaagcgcaacggcaacaattgatgggtgaccaatcgctggctgaggttcgtcaa
catctacaacaacaaactgagcgggcggaagcgagttatctggcaatacagcagcagtgg
caagcggcgcaaaaccagataaatactctgaccgggcagcataaatcacttaatgaacag
ctacgtgcccgccaaaaaaaggcaaccgaagctcaacaacagttagctgcggcgttagaa
cacagcgctttcgccgatgaaaacgccctgctggcggcgcttctcagcgaagaagagagc
caacgtttaaaaagcgaacagcgcgcgcgggaacaacatctgcaccaagccgaaacggtg
aaagcgcaaatagccagcgctttgcaacagcatctggcgcagcgcccggtggccttaaac
caggaagcgtctcaacttgcggcgcaggcggaaacgctgcgccagcaggtgcgtgaaaat
gcgcaacagcaggggcaagtacggcaacagcttgatagcgacagcgaacgtcggcagcaa
cagcagagcctgttacagcaaattgtcgccagcgaagagcgcacagaagagtgggggtat
cttaaccatctgattggctctgctaccggcgataagttccgcaaatttgcccagggatta
acgctcgaccacttagtctggctggcgaataatcagttggcgcgcctacacggccgctac
ttgttacaacgcaaaacgcaggaagcattagagttgcaggtggttgatacctggcaagcc
gacgctacgcgcgatacgcgtaccctctccggcggcgagagttttttggtcagcctggcg
ctggcgttagcgttgtcggacctggtcagccacaagacgcgcattgaatccctgttcctt
gatgagggctttggcacgctggatgccgacacgctagataccgcgctcgatgcgcttgat
gcgcttaatgccagcggcaaaaccattggggtgattagccatgtcgaggcgatgaaggag
cgcatcccggtacagattaaagtgcgtaaaatgaacggtctcggttacagcaagctggaa
tcccccactgagttatccgccagggaaattctgtaa
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