Paramixta manurensis: PMPD1_1500
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Entry
PMPD1_1500 CDS
T10259
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pmak Paramixta manurensis
Pathway
pmak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMPD1_1500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmak03400
]
PMPD1_1500
DNA repair and recombination proteins [BR:
pmak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMPD1_1500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PMPD1_1500
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
SBDS_domain_II
AAA_30
UB2H
DUF87
AAA_22
Tea_C
Motif
Other DBs
NCBI-ProteinID:
QKJ86456
UniProt:
A0A6M8U709
LinkDB
All DBs
Position
1562646..1564661
Genome browser
AA seq
671 aa
AA seq
DB search
MSKLFKLNSAFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTVANVIADLNRPT
MVLAPNKTLAAQLYGEMKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE
QMRLSATKALLERRDVIVVASVSAIYGLGDPDLYLKMMLHLTRGMVIDQRSILRRLAELQ
YSRNDQAFQRGTFRVRGEVIDIFPAESDEIALRVELFDDEVERLSIFDPLTGQVEQTVAR
YTIYPKTHYVTPRERILQAMEEIKLELVDRRKVLLDNNKLLEEQRLTQRTQFDLEMMNEL
GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET
LVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGNYELEKSGGEVIDQVVRPTGLLD
PLIEVRPVSTQVDDLLSEIRLRAAVNERVLVTTLTKRMAEDLTEYLEEHGEKVRYLHSDI
DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG
RAARNINGKAILYGDKITPSMARAISETERRREKQTQYNAEHGIVPQGLNKKVTDILELG
RVSKGKTRGKTPTRAAEAEASYLALTPQALQKKIHELEGQMQKHAQNLEFEEAAQVRDQL
HQLRELFIAAS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaactttttaaacttaactccgcatttaaaccagcaggcgatcagcctgaggcg
attcgtcgcctggaggaggggttagaggatgggctggcacatcaaacgttattgggcgta
accgggtcgggtaaaacctttactgtcgcgaacgtgatcgccgatcttaatcggccgacg
atggttttggcgccgaataaaaccctcgccgcgcaactctatggcgagatgaaagagttc
tttccggataacgccgtggagtacttcgtctcctattacgactattatcagccggaagcc
tacgttccgagctcagatacctttattgagaaggatgcgtcggttaacgaacatattgaa
caaatgcggctgtcggccaccaaagcgttgctggagcgtcgtgatgttatcgtagtggcg
tccgtttcagcgatctacggtttgggcgatccggatttgtacctcaaaatgatgctgcat
cttacacgcggtatggttatcgatcagcgtagcattttgcggcgtttggcggagttacag
tacagccgtaacgatcaggcttttcagcgcggtaccttccgggtgcgcggcgaagtgatt
gatattttccccgccgagtcggatgagattgcgctgcgcgtcgagttgtttgatgacgag
gtagaacggctatccattttcgatccgttgaccggccaggttgagcaaaccgtggcgcgt
tataccatctatccaaagactcactacgtgacgccgcgcgagcgtattttgcaggcgatg
gaagagattaaactagagttagtcgatcgccgtaaagtgctgttggataataacaagctg
ctggaagagcagcgtttaacgcagcgtacccagttcgatttagagatgatgaatgagttg
ggctactgctccggcatcgaaaactattcgcgtttcctctccgggcgcggccccggcgag
ccgccgccgacgttgtttgactatttgcctgccgacggtttgctggtggtggatgaatcg
cacgttaccattccgcaaattggcggcatgtatcgcggtgaccgtgcgcgtaaagagaca
ttggtagagtatggtttccgcctaccatcggcgctggataaccgtccgatgaagtttgag
gagtttgaagcgctggcgccgcaaaccatctatgtatcagcaacgcccggtaattatgaa
ctggagaaatcgggcggtgaagtgatcgatcaggttgtgcggcctaccggcttgctcgat
ccgttgatcgaagtccgaccggtaagcacgcaggttgatgatttactctctgaaatccgc
ttacgggcggcggttaatgagcgggtgttggtgaccacgttaaccaaacggatggccgaa
gatttaaccgaataccttgaagagcacggcgagaaggtgcgttatctgcattcggatatt
gataccgtcgaacggatggagattattcgcgatttacgtctcggcgagtttgatgtgctg
gtcggcatcaacttgctgcgagaagggctggatatgccggaagtatcgctggtggcgatt
ttggatgcggataaagagggcttcttgcgttctgaacgttcgttgatccagaccattggt
cgtgcggcgcgtaacattaacggtaaagccattctgtatggggataaaattactccatca
atggcaagggcgattagcgaaaccgaacgccgtcgggaaaaacagacgcaatacaatgcc
gagcacggtatcgtgccgcaagggctgaataagaaagtcacggatattcttgaactgggc
cgcgtcagtaaagggaaaacacgtggaaaaacgcctacacgggcagccgaagcagaagcc
agttatttggcgctgacgccgcaggcgttgcagaagaaaatccacgaactggaagggcag
atgcagaagcatgcgcagaaccttgagtttgaagaggccgcgcaggtgcgcgaccaattg
catcaactgcgcgagttatttattgccgcctcgtag
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