Paramixta manurensis: PMPD1_1817
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Entry
PMPD1_1817 CDS
T10259
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmak Paramixta manurensis
Pathway
pmak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMPD1_1817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmak03019
]
PMPD1_1817
03009 Ribosome biogenesis [BR:
pmak03009
]
PMPD1_1817
Enzymes [BR:
pmak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PMPD1_1817
Messenger RNA biogenesis [BR:
pmak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMPD1_1817
Ribosome biogenesis [BR:
pmak03009
]
Prokaryotic type
rRNA processing factors
PMPD1_1817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QKJ86767
UniProt:
A0A6M8UE58
LinkDB
All DBs
Position
complement(1894755..1898066)
Genome browser
AA seq
1103 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSSLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRMKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEESLKENTKEVHAIVPVQIASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMALPSEEEHAERRNPEQPALAAFVMPDAPPA
PQEAATSVVTESASKTAPRQARPARPATTQPGLLSRFFGGLKKLFAGEESSPVAAPAKVE
TEVSGESEQQQRNERRNNRRNTNRRDRNNRDRNVDGAQARDNREGRDNRDRDDNNRRNKR
NNVNGTTSEQRDARQAPSNDETRTQQRDEQQQQRREQRAERQRRRQEEKRQQQQQEVKAE
AAPLIEEPAENAVEERVQVMPRRKPRQLNQKIRFTSGEQPVADEQPQAAPLPTVVTQDAP
VSVTAPVSDSNVQEQEDSESRDSNNMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPV
TFASASPEMASGKVWVSYPIAPAQETATATPNDEPISTPDYRREDTAAAVALPPTESIET
ATDSAQPEEAAVQQAEPQQPEAPITVVNTDDTTPIEVPVNSEPSVISAADERVAQHTAEQ
AEPADQVEVNAVAEVAEPVITPTAETASDEAERHPAAVTSSTEAQVEEVLNAPVSATEEI
VATEPHAPVAARDEPVADTAAQSLSGSFRHHATAPMTKAPAPAWQPEPVRQSDWVRPSFN
FDGKGAAGGHTATHQATAPATRP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgataaacgcgactcagcaggaggagttgcgtgttgcccttgttgac
ggacaacgtctgtacgatctggatattgaaagtcctggacacgagcagaaaaaggccaac
atctataaaggtaagatcacgcgcattgaacccagtcttgaagcggcttttgttgattac
ggcgcggaaaggcacggtttccttcctctgaaagagatttcccgcgaatatttccctgcg
aactacaatgcccatggccgccccaacattaaagatgtgttgcgtgaaggccaggaagtc
attgtgcagattgataaagaagagcgcggcaataaaggcgctgcgttgaccacgtttatc
agtctggccggtagctatttggtattaatgccgaataacccacgcgcgggcggtatttca
cgccggattgaaggtgatgatcgtaccgagttgaaagaggcgctctcttcactggagttg
ccggacggtatgggtctgattgtgcgtaccgcaggcgtaggtaagtctgccgaagcgcta
cagtgggatctcagtttccgcatgaagcattgggaagcgattaagaaagcggcggaaagt
cgtcccgcgccgtttctgatccatcaggaaagtaacgttattgtgcgtgctttccgggat
tatttgcgccaggacatcggcgaaatcttgatcgataacccgaaagtccttgaattagcc
cgtcagcacatcgccgcgttaggccgtcctgacttcagcagcaagattaaactttatacc
ggtgagatcccgctgtttagccattaccaaattgagtcgcaaattgagtcggctttccag
cgcgaagttcgcctgccttccggtggttcgatcgttattgataccacggaagcgttgacc
gcgattgatattaactcagcgcgcgccacgcgcggcggggatattgaagaaaccgccttt
aataccaacctggaagcggccgatgaaattgcccgtcagttgcgtttacgcgacctgggc
ggcctgattgttatcgacttcattgatatgacgccagtgcgccatcagcgtgcggtagaa
aaccgtctgcgtgaagcggtacgtcaggatcgcgcgcgtattcaaatcagccacatttca
cgttttggcttgctggaaatgtcacgccagcgcctgagcccgtcgttgggcgaatccagc
catcacgtctgcccacgttgtagcggcactggcactattcgtgataacgaatcactgtcg
ctctctattttgcgtctgattgaagaagagtcgctgaaagagaacaccaaagaagttcac
gccatcgtcccggtacaaatcgcctcttatctgcttaacgaaaaacgtgacgcggtgagt
gcgattgaaaaacgccagggtggcgtgcgtgccattatcgtgccgaatgatcagatggaa
acgccgcactactcggttctgcgcgtgcgtaaaggcgaagagacgcaaacgctcagctac
catctgccgaaactgcacgaagcggaaatggcgctgccgtctgaagaagagcacgctgaa
cgtcgtaacccagagcagccggcgctagccgcatttgttatgccggatgcgcctcctgcg
ccacaggaagccgcgacctcggtggtaaccgagagcgccagcaaaaccgcgcctcgtcag
gctcgtccggctcgtccggccaccactcagcctggcttacttagccgtttctttggcggc
ctgaaaaaactgttcgccggcgaagagagtagccctgtcgccgcccctgccaaggtggaa
accgaagtctccggcgagagcgaacagcagcagcgtaatgagcgtcgtaataatcgccgc
aatactaatcgtcgcgatcgtaataaccgcgatcgtaacgttgatggcgcgcaggcgcgt
gataatcgcgaagggcgtgacaatcgtgaccgcgatgacaacaaccgtcgtaataagcgc
aacaacgttaatggcaccacgtccgaacagcgtgacgcacgtcaagctccgagcaatgac
gaaacacgcacgcagcagcgtgatgaacagcagcagcaacgtcgcgaacagcgtgccgag
cgtcaacgtcgccgtcaggaagagaaacgtcagcaacagcagcaggaagttaaagctgaa
gcggcgccgttaatcgaagaaccggctgaaaacgccgtggaagagcgtgtgcaggtgatg
ccgcgtcgtaaaccgcgtcagttgaatcagaaaatccgcttcacctccggtgagcagcct
gtcgccgacgaacaaccgcaggccgccccgctgccgacggtcgtcacccaggatgcgccg
gtctcggtaactgcgccggttagtgattccaacgtgcaagagcaggaagatagcgaaagc
cgcgatagcaacaacatgccgcgccgctcacgccgttctccgcgtcatctgcgcgtcagc
ggtcagcgtcgtcgtcgttaccgtgatgagcgttatccaacgcagtcaccgatgccggta
acgtttgcctccgcctcgcctgaaatggcttcgggtaaagtctgggtcagctatcccatc
gcacccgcacaggaaaccgctaccgctacgccgaacgatgaaccgatcagcacgccagat
tatcgtcgtgaggataccgctgcggcagtagcgttaccgcctacggaatcgattgagacg
gcaaccgatagcgcacaacctgaagaagcggcggtacagcaggctgaaccgcagcaacct
gaagcaccgattacagtggtgaacaccgacgatacgacaccgattgaagtaccggttaac
agtgagccgtcggttatttccgccgctgatgagcgcgtcgcacaacataccgctgagcaa
gccgaaccggccgatcaggtagaggtaaatgcggtggctgaagtggctgaaccggtcatt
acaccgacggcagaaaccgccagcgacgaagcggagcgccatccggcagcggtgacatcg
tccaccgaagcgcaggttgaggaagttctgaatgcgccggttagcgcaaccgaagagatc
gtggcgacggaaccgcatgcaccggttgccgcccgtgatgagccggttgccgacactgcc
gcacaatctctttcaggctccttccggcaccacgcgacagcaccgatgactaaagcacca
gcgcctgcctggcagccagagccggtacgtcagagtgactgggtacgcccatcgtttaat
ttcgacggcaaaggtgccgctggcgggcataccgcaacgcatcaggctaccgcgccggca
acccggccatag
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