Paramixta manurensis: PMPD1_3545
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Entry
PMPD1_3545 CDS
T10259
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pmak Paramixta manurensis
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmak03009
]
PMPD1_3545
Enzymes [BR:
pmak01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PMPD1_3545
Ribosome biogenesis [BR:
pmak03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PMPD1_3545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
RrnaAD
Methyltransf_25
PCMT
TRM5-TYW2_MTfase
MTS
Methyltransf_4
Methyltransf_23
Methyltransf_15
FtsJ
Methyltransf_11
Cons_hypoth95
Thioredoxin_6
Motif
Other DBs
NCBI-ProteinID:
QKJ88462
UniProt:
A0A6M8UNG5
LinkDB
All DBs
Position
complement(3715646..3716962)
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AA seq
438 aa
AA seq
DB search
MAQFYSAKRRVTTRQTITVTIDELDVFGQGVARHQGKALFVSGALPGEQAEVEIVEDKRQ
YARAKTRRLLNQSPERVTPLCPHFSVCGGCQQQHASQALQQRSKARWLAHLLSRETGREV
PIDEVLSDGAWQYRRRARLGLNYQAKSRRLQMGFRQAASAELVDITQCPILKPELNALLM
PLRACLSELRAVRRLGHVELVQADNGPLLVLRHLDALHAEDRQKLERFSHQHRVALFLAP
DSETLEQVNGEMPFYQVDDLRLTFSPRDFIQVNEAVNQQMVAKALAWLDIQSDDRILDLF
CGMGNFTLPLAKRAQNVVGVEGVTALVNKGAYNAGVNYLKNVAFFHANLEEDVTRQPWAA
QGFTKVLLDPARAGAAGVMQHITKLAPHRVVYVSCNPTTLARDSQTLLAAGYQLERVAML
DMFPHTGHLESMVLFSKA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacggcgtgtgacgacccgacaaacgattactgtgacg
attgatgaactggatgtgttcggccagggcgtcgcgcgtcatcaagggaaagccttgttt
gtcagcggcgcattgccaggagagcaggctgaagtcgagatcgtggaggataagcgtcaa
tatgcgcgtgccaaaactcgccggctgctgaatcagagcccggaacgtgtcacgccattg
tgcccccattttagcgtctgcggcggctgccagcagcaacacgcttcgcaggctttgcaa
cagcgtagtaaagcgcgttggctggcacatttattaagccgcgaaaccggacgggaagtg
ccgattgatgaagtacttagtgacggtgcctggcaatatcgccgccgcgcccgtctcggc
ttgaactaccaggccaaaagccgccgcttacaaatgggcttccgtcaggccgcttccgcc
gagttggtggatatcacgcaatgccccattttgaagcccgaacttaacgcattactcatg
cccttacgcgcctgcttatccgagttgcgcgcagtgcggcggttggggcatgtggagctg
gtgcaggcggataatggcccgctactggtattacgccatcttgatgcattgcatgctgaa
gatcggcaaaaactggaacgattttcgcatcagcatcgcgtggccctgtttttagcgccg
gatagcgaaacgctggagcaggttaacggcgagatgcccttttaccaggtcgacgatctc
cggctgacgttcagtccacgggattttatccaagttaatgaggcggttaaccagcaaatg
gtggcgaaagcgctggcctggctcgatatccaatccgacgaccgtatactggatctgttc
tgcggtatggggaactttactctgccgttggcaaaacgagcgcaaaatgttgtcggtgtg
gagggcgttacagctttagtaaataagggtgcgtataatgcgggtgtgaattatcttaaa
aacgttgctttttttcacgccaatctggaagaagatgtgacgcgccagccttgggcagcg
cagggatttaccaaagtgttattggatccagctcgcgcgggcgcggcgggtgtaatgcaa
cacattaccaaactcgcaccgcatcgtgttgtctacgtttcctgtaatccgactacactt
gcccgggacagtcagaccttgctggctgccggttaccaattggaaagggtcgcgatgctc
gatatgttcccgcataccgggcatctcgaatccatggtgctgtttagtaaagcataa
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