Entry |
|
Name |
(GenBank) DNA polymerase I
|
KO |
|
Organism |
pmak Paramixta manurensis
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:pmak00001]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PMPD1_4203
03410 Base excision repair
PMPD1_4203
03420 Nucleotide excision repair
PMPD1_4203
03440 Homologous recombination
PMPD1_4203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:pmak03032]
PMPD1_4203
03400 DNA repair and recombination proteins [BR:pmak03400]
PMPD1_4203
Enzymes [BR:pmak01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PMPD1_4203
DNA replication proteins [BR:pmak03032]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PMPD1_4203
DNA repair and recombination proteins [BR:pmak03400]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
PMPD1_4203
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMPD1_4203
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(4437871..4440657)
|
AA seq |
928 aa
MAQIAENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLLLQYKPSHVAV
VFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHQMVKAMGLPLLAVSGVEADDVIGT
LALQAEQQGRAVLISTGDKDMAQLVTPNITLINTMNNTVLGPEEVTEKYGVPPELIIDFL
ALMGDSSDNIPGVPGVGEKTAQALLQGLGGMSAIYDQLDKVVGLSFRGAKTMAAKLAENE
EVAFLSYQLATIKTDVELEVTCEELTVSEPSVEALLELFKHYEFKRWLSDLEEGKWLQGK
KSNLTAQKKRVEKTTVQPEAVSVLSADGYVTILDDKTFDEWLARLQNSGLFAFDLETNSL
DTISAEIIGLSFAVAPGEAAYLPVAHDYLDAPDQLDRKQVLAKLKPLLEDNRLLKVGQNL
KYDRGVLKNYDIELGGIKFDTMLESYMLNSVAGRHDMDSLASRWLNHKTVTFEEIAGKGK
NQLTFNQIALEQAAHYAAEDADVTLQLHLKMWPELENQAGPKAVFEQIEMPLLTVISRIE
RNGVLIDQNILAAHSKELTSRLSELELKAHELAGEPFNLSSTKQLQTILFEKQGIKPTKK
TPGGAPSTSEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPHTGRVHTSYHQ
AVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPKGHRIVAADYSQIELRIMAHLSQDK
GLLGAFAEGQDIHRATAAEVFGVALEKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGA
GEAKKYMDLYFERYPGVLQYMENTRQLAAEKGYVSTLDGRRLYLPDIQSGNAIRRKAAER
AAINAPMQGTAADIIKRAMIAVDEWLLTPEAVGVKMIMQVHDELVFEVEQSVVESANQKI
RQLMESSMTLDVPLRVDVGVGDNWDQAH |
NT seq |
2787 nt +upstreamnt +downstreamnt
atggctcaaatcgcagaaaatccgctgattctggtagacggctcctcttatttatatcgt
gcttaccatgcgtttccgccgctgacaaatagcgcgggcgaaccaacaggcgcaatgtac
ggtgtgcttaatatgttgcgtagcctgttattgcaatataagccgagccatgtcgcggtg
gtgtttgacgccaaaggaaaaacatttcgcgatgagttatttgaacactacaaatctcat
cgtcccccgatgccggatgatttgcgtgcgcagatagaaccactacaccaaatggtaaaa
gccatggggttacctctactggcagtttcaggcgtggaggcggatgacgttattggcaca
ctggcgcttcaggcggaacaacaggggcgcgcggtgctgatcagtactggcgataaagat
atggcgcagttagtgacgccgaatatcacgctgatcaacaccatgaataacaccgtgctc
ggtccggaagaggtcacggaaaagtatggtgtcccgccggagttgatcattgatttcctg
gcattgatgggagactcgtcggacaacattcccggagtgcccggcgtgggtgagaaaact
gcgcaggccttgttgcaagggttaggcggaatgagcgcgatttatgaccagctagataaa
gtggtcgggctttccttccgtggcgccaaaaccatggcggcgaagcttgcggaaaatgaa
gaggtcgctttcctctcctatcaattggccaccatcaaaacggatgtggaattagaggtc
acctgcgaagagctgacggtcagtgaaccaagcgtagaagcgctattagagctatttaaa
cactacgaatttaagcgttggctaagcgatctggaagagggcaaatggctacagggcaag
aaaagtaaccttactgcgcaaaaaaaacgggtggaaaaaaccaccgtacagccggaagcg
gtgagcgtgctctccgccgatggttatgtcaccattttggatgacaaaacatttgatgag
tggcttgcgcggctacaaaatagcggtctttttgcctttgatctggaaaccaactcgctc
gataccatcagcgctgaaattattgggctgtcttttgccgttgcaccgggtgaggccgct
tatttgcccgttgcgcatgattatcttgatgcgccagaccagttagatcgcaagcaggta
ttggcgaagctgaaaccattattggaagataaccggttgctgaaggtaggccagaacctg
aaatacgatcgaggtgtactgaagaactacgatattgagcttggcggcattaaatttgac
accatgcttgagtcatacatgcttaacagcgtggcgggtagacatgatatggacagcctc
gcatcgcggtggttgaaccataaaaccgttacctttgaagagattgccggtaagggtaaa
aatcaactgaccttcaatcagatcgcattagagcaggcggcgcattatgccgcagaagat
gctgatgtgacgctccagttgcatttgaagatgtggcctgagctggaaaatcaggcgggg
ccaaaagcggtgtttgaacagattgaaatgccgctactcacggtcatctcccggattgaa
cgtaacggcgttttaatcgaccagaatatcctggccgcgcactcgaaagagttaaccagc
cgtctatcggagctggaactgaaggcgcatgagttggcgggagaacctttcaacctctct
tccaccaagcaactacaaactatactgtttgaaaaacagggcattaagcccaccaaaaaa
acaccgggcggcgcgccttcaaccagtgaagaagtattggccgagctagcgctggattat
ccgctgccaaaagtcatccttgagcatcgtggtttgtccaaactgaaatcgacctatacc
gataaactgccattgatgattaatccgcacaccgggcgcgttcatacttcttatcatcaa
gcggttaccgcgaccggacgtttgtcttcgaccgatcctaacttgcagaacatcccggta
cgaaatgaagaagggcgtcgtattcgccaggccttcattgcgccaaaagggcaccgcatt
gtggcggcggactattcacagatagagctgcggatcatggcgcacttgtcgcaagataag
gggttgctgggtgcgtttgccgaaggtcaggatatccatcgggcgacggcggcagaggtg
tttggcgtcgcgctggagaaagtgagcggtgagcaacgacgtagcgcgaaggcgattaac
ttcgggttgatttacgggatgagcgcatttggtttatcgcggcaactgaatattggcgcc
ggcgaagcgaagaaatatatggatctttacttcgagcgttatcctggcgtgctgcaatat
atggagaacacgcggcagctagcggcggagaaggggtatgtttccacgctggacgggcgc
cgtctgtacctgccagatattcagtctggtaatgcgattcggcgcaaagcggccgagcgt
gcggcaatcaatgcgccgatgcagggcacggcggcagatattattaaacgtgccatgatt
gcggtagacgaatggctgttaacgccagaggccgtcggtgtaaaaatgattatgcaagtt
cacgatgagctggtgtttgaggtggaacaaagcgtggtggaaagcgctaatcagaaaatt
cgtcaattaatggaaagcagcatgacactggatgtaccgttgcgcgttgatgtgggcgtt
ggcgataactgggatcaggcgcactaa |