Paramixta manurensis: PMPD1_4239
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Entry
PMPD1_4239 CDS
T10259
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmak Paramixta manurensis
Pathway
pmak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMPD1_4239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmak03019
]
PMPD1_4239
03400 DNA repair and recombination proteins [BR:
pmak03400
]
PMPD1_4239
Enzymes [BR:
pmak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PMPD1_4239
Messenger RNA biogenesis [BR:
pmak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMPD1_4239
DNA repair and recombination proteins [BR:
pmak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PMPD1_4239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QKJ89140
UniProt:
A0A6M8UMV8
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All DBs
Position
complement(4480824..4482620)
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AA seq
598 aa
AA seq
DB search
MLAEQVLRDTFGYQQFRPGQQTIIQSSLAGRDCLVVMPTGGGKSLCYQIPALVREGLTLV
VSPLISLMKDQVDQLLANGVAAACLNSTQTREQQQEVMAGCRSGRIRLLYIAPERLMMDN
FLDSLAHWNPAMLAVDEAHCISQWGHDFRPEYGALGQLRQRFAQLPVMALTATADETTRN
DIVRLLQLNDPLIQISSFDRPNIRYMLVEKFKPTEQLLRYVQDQRGKSGIIYCNSRAKVE
DTAARLQSRGFSVGAYHAGMENTHRAQVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH
FDIPRNIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKAPGQLLDIERHKLNA
MGAFAEAQTCRRLVLLNYFGEGRQQACGNCDICLDPPRRYDGLVEAQKALSCIYRVGQRF
GMGYVVEVLRGANNQRIRELGHDKLPVYGLGRDQSHEHWVSVLRQLIHLGLVTQNIAMHS
ALQLTEAARPVLRGEAPLRLAVPRLVSIKTKNSSQKSYAGNYDRKLFAKLRKLRKAIADE
ENIPPYVVFNDATLIEMAEQMPLTASEMLSVNGVGHRKLERFGKPFMVMIREHVDGEE
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgctggcagaacaggtattacgcgataccttcggctaccagcaatttcgccccgggcag
caaaccattattcagagttcgctggctggtcgtgattgcctggtggtgatgcccaccggc
ggcggtaaatccctctgctatcaaatcccggccttagtgcgtgaaggcctgacattagtg
gtttcgccgctcatctcgctgatgaaagatcaggttgatcaactgttggcgaacggggtg
gcggcggcctgtttgaattccacgcaaacgcgagaacagcagcaagaggtcatggcgggc
tgtcgcagtggacgtattcgtttgctgtatattgcgccggaacgcttgatgatggataac
ttcctcgactcgctggcgcactggaacccggcgatgttggcggtggatgaagctcactgt
atttcgcagtgggggcatgatttccgccctgaatatggcgcgttggggcaattgcgccaa
cggtttgcacaattaccggtcatggcgctgaccgccacggccgacgaaaccacccgtaat
gacattgttcggttactgcaactaaacgatccgctgatccagattagtagttttgaccgc
ccgaatattcgctacatgctggtggagaagtttaagcctaccgaacaattgctgcgctat
gttcaagatcaacgcggtaaaagcggcattatttactgtaatagccgcgccaaagtcgaa
gataccgccgcacgtttacaaagccggggttttagcgtcggtgcctatcatgccggaatg
gagaatacccaccgcgcgcaggtgcaagaagcctttcaacgcgatgatttgcagattgtt
gtcgcaaccgtggcgtttggcatggggattaataagcctaatgtgcggtttgtggtgcat
ttcgacattccacgcaacattgaatcctactatcaggaaaccgggcgcgccgggcgtgat
ggcttaccggcggaggcgatgctgttatacgacccggcggatatggcatggctgcggcgc
tgtctggaagagaaagcgcctgggcaattgttagatattgaacggcataagctcaatgcg
atgggcgcttttgccgaggcgcaaacctgtcgtcgtctggtattacttaactattttggc
gaagggcgtcagcaagcgtgcggcaactgtgatatttgcctcgatcccccgcgccgctat
gacgggctggttgaagcgcaaaaagcgctctcctgtatttatcgtgtggggcagcgtttc
ggcatgggatatgtggttgaggtgctgcgcggtgccaataatcaacgtatccgggaactg
gggcatgataagttgccggtgtacggcttaggacgcgatcagagccatgagcactgggtg
agtgtcttacgccagcttattcacttagggttggtgacacaaaatatcgctatgcattcg
gcgctccagttaaccgaggcggctcgccctgtgttgcgcggtgaagcgccgctgaggtta
gcggtaccgcgtctggtcagtattaaaaccaaaaacagtagccagaaatcgtatgccggt
aattacgaccgtaaactgttcgccaaactgcgtaagttgcgtaaagcgattgccgatgaa
gagaatattccaccttacgtcgtgttcaatgacgccacactaattgaaatggcagaacag
atgccgctgaccgcctcagaaatgctgagcgtaaacggcgtggggcatcgaaaactggag
cgatttggtaaaccgtttatggtcatgatccgtgagcatgttgacggtgaggaataa
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